Factsheet for PGSC0003DMT400009620

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080810.2.1	Tomato	mitochondrion, nucleus	98.76	98.76
VIT_18s0001g13180.t01	Wine grape	cytosol	93.79	93.79
Zm00001d033374_P001	Maize	endoplasmic reticulum, extracellular, nucleus, plastid	28.57	90.2
GSMUA_Achr4P20980_001	Banana	cytosol, mitochondrion, nucleus, plastid	90.06	90.06
PGSC0003DMT400009304	Potato	nucleus	90.06	90.06
Os03t0681400-01	Rice	cytosol	88.82	88.82
TraesCS5D01G006000.1	Wheat	cytosol	86.34	86.34
TraesCS5B01G005100.1	Wheat	cytosol	86.34	86.34
TraesCS5A01G006200.1	Wheat	cytosol	86.34	86.34
EES17494	Sorghum	cytosol	86.34	86.34
Zm00001d041216_P001	Maize	extracellular	85.09	85.09
Os12t0636800-01	Rice	cytosol	84.47	84.47
CDX75572	Canola	nucleus	84.47	84.47
Bra011680.1-P	Field mustard	nucleus	84.47	84.47
CDX69222	Canola	nucleus	83.85	83.85
EER91078	Sorghum	cytosol, plastid	84.47	82.42
AT4G36410.1	Thale cress	nucleus	81.99	81.99
Bra017759.1-P	Field mustard	cytosol	81.37	81.37
TraesCS4A01G288800.1	Wheat	cytosol	62.73	80.16
CDY64924	Canola	cytosol	80.12	80.12
HORVU4Hr1G003890.1	Barley	cytosol, mitochondrion	80.75	79.75
TraesCS4D01G023400.1	Wheat	cytosol, mitochondrion	80.75	79.75
CDY59697	Canola	nucleus	78.88	78.88
HORVU0Hr1G000080.1	Barley	extracellular	36.02	77.33
TraesCS4B01G026000.2	Wheat	cytosol	80.75	74.29
Zm00001d031205_P004	Maize	cytosol	71.43	67.25
Zm00001d013546_P003	Maize	mitochondrion, plastid	82.61	63.33

Protein Annotations

EntrezGene:102605143	Gene3D:3.10.110.10	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0009719	GO:GO:0009739	GO:GO:0016740
InterPro:IPR000608	InterPro:IPR016135	UniProt:M0ZWM9	PFAM:PF00179	EnsemblPlantsGene:PGSC0003DMG400003753	PGSC:PGSC0003DMG400003753
EnsemblPlants:PGSC0003DMT400009620	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR44452	PANTHER:PTHR44452:SF4	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000295E392	RefSeq:XP_006341983.1
SEG:seg	:	:	:	:	:

Description

Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003753]

Coordinates

chr4:-:70213303..70216843

Molecular Weight (calculated)

18429.0 Da

IEP (calculated)

8.332

GRAVY (calculated)

-0.474

Length

161 amino acids

Sequence
(BLAST)

001: MTSPSASSRK VLSKIACNRL QKELMEWQVN PPAGFKHKVT DNLQRWIIEV NGAPGTLYAN EMYQLQVDFP EHYPMEAPQV VFIHPAPSHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTVK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V

Best Arabidopsis Sequence Match ( AT1G45050.1 )
(BLAST)

001: MTSSSAPSRK ALSKIACNRL QKELSEWQLN PPTGFRHKVT DNLQKWTIDV TGAPGTLYAN ETYQLQVEFP EHYPMEAPQV VFVSPAPSHP HIYSNGHICL
101: DILYDSWSPA MTVNSVCISI LSMLSSSPAK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V

Arabidopsis Description

UBC15Ubiquitin-conjugating enzyme 15 [Source:UniProtKB/Swiss-Prot;Acc:P42743]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.