Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42990.1 | CDX92559 | AT5G19080.1 | 21798944 |
| AT5G42990.1 | CDY13949 | AT5G19080.1 | 21798944 |
| AT5G42990.1 | CDY13950 | AT5G19080.1 | 21798944 |
| AT5G42990.1 | CDY13958 | AT5G19080.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033374_P001 | Maize | endoplasmic reticulum, extracellular, nucleus, plastid | 20.44 | 90.2 |
| AT5G42990.1 | Thale cress | cytosol | 62.67 | 87.58 |
| CDY32969 | Canola | plastid | 64.89 | 83.91 |
| CDY12582 | Canola | cytosol | 58.67 | 81.99 |
| CDY47951 | Canola | cytosol | 58.67 | 81.99 |
| Os03t0681400-01 | Rice | cytosol | 58.22 | 81.37 |
| CDY47522 | Canola | nucleus | 57.78 | 80.75 |
| EES17494 | Sorghum | cytosol | 57.78 | 80.75 |
| CDY25658 | Canola | cytosol | 60.44 | 80.47 |
| CDX73173 | Canola | cytosol | 57.33 | 80.12 |
| HORVU0Hr1G000080.1 | Barley | extracellular | 26.67 | 80.0 |
| Zm00001d041216_P001 | Maize | extracellular | 56.89 | 79.5 |
| Os12t0636800-01 | Rice | cytosol | 56.89 | 79.5 |
| TraesCS5A01G006200.1 | Wheat | cytosol | 56.89 | 79.5 |
| TraesCS5B01G005100.1 | Wheat | cytosol | 56.89 | 79.5 |
| TraesCS5D01G006000.1 | Wheat | cytosol | 56.89 | 79.5 |
| EER91078 | Sorghum | cytosol, plastid | 55.56 | 75.76 |
| TraesCS4A01G288800.1 | Wheat | cytosol | 41.78 | 74.6 |
| HORVU4Hr1G003890.1 | Barley | cytosol, mitochondrion | 53.78 | 74.23 |
| TraesCS4D01G023400.1 | Wheat | cytosol, mitochondrion | 53.78 | 74.23 |
| CDX75572 | Canola | nucleus | 51.56 | 72.05 |
| CDX69222 | Canola | nucleus | 51.11 | 71.43 |
| CDY64924 | Canola | cytosol | 50.67 | 70.81 |
| CDY59697 | Canola | nucleus | 49.78 | 69.57 |
| TraesCS4B01G026000.2 | Wheat | cytosol | 53.78 | 69.14 |
| CDY43850 | Canola | nucleus | 63.11 | 67.3 |
| Zm00001d031205_P004 | Maize | cytosol | 47.56 | 62.57 |
| Zm00001d013546_P003 | Maize | mitochondrion, plastid | 54.67 | 58.57 |
| VIT_09s0002g07740.t01 | Wine grape | cytosol | 19.56 | 53.66 |
| VIT_09s0002g07790.t01 | Wine grape | cytosol | 18.67 | 51.22 |
Protein Annotations
| Gene3D:3.10.110.10 | MapMan:35.1 | GO:A0A078I3B7 | UniProt:A0A078I3B7 | EnsemblPlants:CDY43593 | ProteinID:CDY43593 |
| ProteinID:CDY43593.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00076903001 | InterPro:IPR000608 | InterPro:IPR016135 | PFAM:PF00179 | ScanProsite:PS00183 |
| PFscan:PS50127 | PANTHER:PTHR44452 | PANTHER:PTHR44452:SF1 | MetaCyc:PWY-7511 | SMART:SM00212 | SUPFAM:SSF54495 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniPathway:UPA00143 | UniParc:UPI0004EE6057 | SEG:seg |
Description
BnaC09g17320DBnaC09g17320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3B7]
Coordinates
chrLK032562:-:41084..43224
Molecular Weight (calculated)
25674.4 Da
IEP (calculated)
9.317
GRAVY (calculated)
-0.435
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MISDTCENGE GVRTVRWKMG YSVIYDSFTC IFVWPYSRES SFFSYTFFFK YLKNSDKSRR SKVLLSVSDS TSVSATMTSS SSPSRKALSK IACNRLQKEL
101: SEWQVNPPTG FKHKVTDNLQ KWIIEVTGAP GTLYANETYK LQQVVFVSPA PLHPHIYSNG HICLDILYDS WSPAMTVSSV CISILSMLSS SPEKQRPADN
201: DRYVKNCKNG RSPKETRWWF HDDKA
101: SEWQVNPPTG FKHKVTDNLQ KWIIEVTGAP GTLYANETYK LQQVVFVSPA PLHPHIYSNG HICLDILYDS WSPAMTVSSV CISILSMLSS SPEKQRPADN
201: DRYVKNCKNG RSPKETRWWF HDDKA
001: MTSSSAPSRK ALSKIACNRL QKELSEWQLN PPTGFRHKVT DNLQKWTIDV TGAPGTLYAN ETYQLQVEFP EHYPMEAPQV VFVSPAPSHP HIYSNGHICL
101: DILYDSWSPA MTVNSVCISI LSMLSSSPAK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V
101: DILYDSWSPA MTVNSVCISI LSMLSSSPAK QRPADNDRYV KNCKNGRSPK ETRWWFHDDK V
Arabidopsis Description
UBC15Ubiquitin-conjugating enzyme 15 [Source:UniProtKB/Swiss-Prot;Acc:P42743]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.