Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc10g086400.1.1 | |
| Solyc11g066420.1.1 | |
| Solyc11g073280.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27060.1 | Solyc10g086400.1.1 | AT5G02530.1 | 21798944 |
| AT4G27060.1 | Solyc11g073280.1.1 | AT5G02530.1 | 21798944 |
| AT4G27060.1 | Solyc11g066420.1.1 | AT5G22890.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037390 | Potato | plastid | 92.25 | 92.46 |
| VIT_19s0090g00020.t01 | Wine grape | plastid | 65.51 | 60.34 |
| KRG98830 | Soybean | plastid | 59.95 | 56.12 |
| KRH46114 | Soybean | plastid | 59.38 | 55.4 |
| CDY29609 | Canola | cytosol | 46.18 | 51.62 |
| Bra030470.1-P | Field mustard | cytosol | 45.83 | 51.23 |
| GSMUA_Achr9P11640_001 | Banana | cytosol | 50.46 | 50.64 |
| AT1G50890.1 | Thale cress | plastid | 47.45 | 49.94 |
| GSMUA_Achr9P02790_001 | Banana | plastid | 43.17 | 49.8 |
| AT4G27060.1 | Thale cress | plastid | 49.31 | 49.31 |
| CDY29271 | Canola | plastid | 46.88 | 47.04 |
| CDY07335 | Canola | cytosol | 44.79 | 46.68 |
| HORVU2Hr1G046160.2 | Barley | cytosol, plastid | 37.5 | 46.48 |
| TraesCS2A01G221200.6 | Wheat | plastid | 47.11 | 45.99 |
| TraesCS2D01G226900.1 | Wheat | plastid | 46.76 | 45.65 |
| TraesCS2B01G246900.8 | Wheat | plastid | 46.64 | 45.64 |
| Os07t0520400-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 45.95 | 44.36 |
| EER99458 | Sorghum | plastid | 46.06 | 43.17 |
| Zm00001d021641_P002 | Maize | plastid | 45.49 | 42.39 |
| CDX89282 | Canola | plastid | 46.53 | 42.27 |
| Bra026382.1-P | Field mustard | plastid | 47.34 | 41.48 |
| Zm00001d006504_P005 | Maize | plastid | 43.06 | 40.04 |
| Solyc07g042580.2.1 | Tomato | cytosol | 23.26 | 24.13 |
| Solyc03g113680.2.1 | Tomato | nucleus | 17.48 | 24.12 |
| Solyc05g006550.2.1 | Tomato | cytosol | 17.94 | 23.34 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:20.1.5.3 | InterPro:ARM-like | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007275 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009653 |
| GO:GO:0009826 | GO:GO:0009987 | GO:GO:0010005 | GO:GO:0010031 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0040007 | InterPro:IPR011989 | UniProt:K4CXG6 | PANTHER:PTHR31355 | PANTHER:PTHR31355:SF7 | SUPFAM:SSF48371 |
| EnsemblPlantsGene:Solyc10g006350.2 | EnsemblPlants:Solyc10g006350.2.1 | InterPro:TORTIFOLIA1/SPIRAL2-like | UniParc:UPI000276AB8B | SEG:seg | : |
Description
No Description!
Coordinates
chr10:-:974968..983342
Molecular Weight (calculated)
93642.9 Da
IEP (calculated)
5.028
GRAVY (calculated)
-0.457
Length
864 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQVSKSSK PSKPTTQSSS APPSRSSSSS SSSSLSTHLA MIELKQRILT SISKLSDRDT HQIAVEDLEK IIQTLSNDGV SMLLNCLYDA SNDPKPAVKK
101: ETLRLLPTVC ASHGDSAATH LTKIIGNIVK RLKDSDSGVR DACRDAIGSL SSLYLKGEAE SGGIGSVVAL FVKPLFEAMN ENNKTVQSGA ALCMAKMVEC
201: ASDPPVLSFQ KLCPRICKYL NNPHFMAKAS LLPVVSSLSQ VGAIAQQNLE PLLQTIHECL SNTDWATRKA AADTLSALAL NSSNLVAGGA TSTLTVLEAS
301: RFDKIKPVRD SMLEALQHWK KIAGKEDGAT DDQKASCVDG ESSESAGSSE KDLRNAVGIL KKRGPALSDR KLNPEFFQKL EERSSNDLPV EVVVPRQCLN
401: ASNTPTEVES APDKAETGQR IMRKSHSDAR YSNSESQTSG VSGREHDTVD DGDLNQREQS SYRAGFAKNA GPPEGFMANK GNWLAIQRQL LLLERQQAHL
501: TNMLQDFMGG SHGSMVALEN RVRGLERVVE DMARDLSLSA GRRGSAFTAR FDESLNRPLG KYNSFHDYSS TKLGRGSEGS IPFGERFVPS DGNSSGMRGR
601: SPPRRSDNPD AWDFHSYGKN GQSGSRRGIG GGPMDARSSK LENEIDQVGT RRGWAKGAGP VRFGEGPSAR SIWQASKDEA TLEAIRVAGD DNGTARGTRV
701: AIPELEAEAL TDDNNMQERD PVWTSWTNAM DAFSVGDMDS AFSEVLSTGD DFLLVKLMDR SGPVIDQLSN EVASETLHAV AQFLLEPNLT DICLSWVQQL
801: LEIVVENEPE VVDLPMEVKK ELLLNLNEIS SSVDLPEDWE GATPEQLLLQ LASAWDIDLQ ELEK
101: ETLRLLPTVC ASHGDSAATH LTKIIGNIVK RLKDSDSGVR DACRDAIGSL SSLYLKGEAE SGGIGSVVAL FVKPLFEAMN ENNKTVQSGA ALCMAKMVEC
201: ASDPPVLSFQ KLCPRICKYL NNPHFMAKAS LLPVVSSLSQ VGAIAQQNLE PLLQTIHECL SNTDWATRKA AADTLSALAL NSSNLVAGGA TSTLTVLEAS
301: RFDKIKPVRD SMLEALQHWK KIAGKEDGAT DDQKASCVDG ESSESAGSSE KDLRNAVGIL KKRGPALSDR KLNPEFFQKL EERSSNDLPV EVVVPRQCLN
401: ASNTPTEVES APDKAETGQR IMRKSHSDAR YSNSESQTSG VSGREHDTVD DGDLNQREQS SYRAGFAKNA GPPEGFMANK GNWLAIQRQL LLLERQQAHL
501: TNMLQDFMGG SHGSMVALEN RVRGLERVVE DMARDLSLSA GRRGSAFTAR FDESLNRPLG KYNSFHDYSS TKLGRGSEGS IPFGERFVPS DGNSSGMRGR
601: SPPRRSDNPD AWDFHSYGKN GQSGSRRGIG GGPMDARSSK LENEIDQVGT RRGWAKGAGP VRFGEGPSAR SIWQASKDEA TLEAIRVAGD DNGTARGTRV
701: AIPELEAEAL TDDNNMQERD PVWTSWTNAM DAFSVGDMDS AFSEVLSTGD DFLLVKLMDR SGPVIDQLSN EVASETLHAV AQFLLEPNLT DICLSWVQQL
801: LEIVVENEPE VVDLPMEVKK ELLLNLNEIS SSVDLPEDWE GATPEQLLLQ LASAWDIDLQ ELEK
001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK
Arabidopsis Description
TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.