Factsheet for Solyc05g006550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058293	Potato	extracellular	79.82	82.55
VIT_01s0026g01020.t01	Wine grape	cytosol	43.67	44.96
CDX68449	Canola	cytosol	4.82	43.24
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	28.01	40.52
AT1G59850.1	Thale cress	plastid	29.97	39.96
CDY24496	Canola	plastid	27.86	39.87
CDY33611	Canola	cytosol, nucleus, plastid	27.26	39.61
KRH74717	Soybean	plastid	38.7	38.53
CDY16232	Canola	plastid	35.99	37.94
KRH69431	Soybean	endoplasmic reticulum, nucleus	37.35	37.75
CDY46411	Canola	plastid	34.34	37.62
AT1G27210.1	Thale cress	plastid	35.24	37.44
Bra024646.1-P	Field mustard	plastid	35.84	37.3
CDY62371	Canola	plastid	29.07	37.26
Bra016316.1-P	Field mustard	plastid	33.73	36.96
Solyc03g113680.2.1	Tomato	nucleus	34.49	36.58
CDY14680	Canola	cytosol, plastid	35.54	33.33
Os02t0739900-01	Rice	cytosol, mitochondrion	28.01	30.39
GSMUA_Achr7P02250_001	Banana	cytosol	24.7	29.55
Zm00001d037271_P001	Maize	cytosol	27.26	29.48
EES05553	Sorghum	cytosol	27.11	29.22
TraesCS7A01G236800.1	Wheat	cytosol	27.56	29.19
HORVU7Hr1G040280.1	Barley	peroxisome	26.81	28.71
Os06t0244700-01	Rice	cytosol	22.74	28.6
KXG19701	Sorghum	cytosol	26.36	28.27
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	26.05	28.27
TraesCS6B01G341700.1	Wheat	mitochondrion	26.36	28.23
TraesCS6D01G290800.1	Wheat	mitochondrion	26.36	28.18
Zm00001d044760_P001	Maize	cytosol	25.3	27.68
Bra007853.1-P	Field mustard	nucleus	8.73	27.23
TraesCS6A01G311500.1	Wheat	cytosol	23.95	26.99
TraesCS7D01G199100.1	Wheat	plastid	28.01	26.35
TraesCS7B01G103000.1	Wheat	plastid	27.56	25.92
Zm00001d016462_P001	Maize	cytosol	16.11	25.24
Zm00001d017306_P002	Maize	cytosol	10.84	22.86
HORVU6Hr1G076760.1	Barley	nucleus	20.03	21.59
Zm00001d044701_P001	Maize	cytosol	15.66	21.36
Solyc07g042580.2.1	Tomato	cytosol	24.55	19.57
Solyc10g006350.2.1	Tomato	plastid	23.34	17.94

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Cohesin_HEAT	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:HEAT	InterPro:HEAT_type_2	InterPro:IPR011989
InterPro:IPR021133	UniProt:K4BWI1	PFAM:PF02985	PFAM:PF12765	PFscan:PS50077	PANTHER:PTHR31355
PANTHER:PTHR31355:SF3	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc05g006550.2	EnsemblPlants:Solyc05g006550.2.1	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI000276566A
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:1184571..1188615

Molecular Weight (calculated)

72797.8 Da

IEP (calculated)

8.204

GRAVY (calculated)

-0.425

Length

664 amino acids

Sequence
(BLAST)

001: MALQRQPSDL KNRVNTCLNR LSDRDTLAVA TNELESIVRS LNSEGFSAFL TCISSTDSSD KSPVRRQCVR LIGVLSATHG DALSPHLAKM LSTVLRRLRD
101: PDSAVRSACV EAVSSIASEI TQPPFSSILK PLIDAIMHEQ DNNSQIGASL CLAAAIEASP DPEPAELKKI LSKLMKLVKN DSFKAKPALL SLIGSIVSVG
201: GASNKNVLNS LVPITAELLS SEDWTVRKAA AETLGRLAVS EKELLSELKA FCITSLDNRR FDKVKVVRET MNRALEWWKE VPGTSDDVLP QLQSKFPHKD
301: CISGACSPTP SKSSSDTAME TPQPKKAIRS TKSLASSSSS SITSQKNSSI RFRRTKSNVT SSCKLDFRKS PDAKAKHTVS QASSLEVACE EQKSQNFRVQ
401: GSVDSVSCSS SNSEAKSTLF NRPPDEKFHR YGNSQFGSRV IPLFEDYNDN MDVPAEDINE DAFLSHREYE NFCSVSKQLV QIENQQSSLL DLLQGFIGSS
501: RHGMNSLEKR VNGLERLLDE MQYDLAITTG RISDTDFTGS TCSMIPRAEF LGPKFWRSPE GQNSQSRISF STGSQDVAYS PSETDATKQN KNISSAKQFS
601: ITPGEALRSF SSRRKERIAR DGETAGFCHV SRLNGTSFTN CIQQLCGQEN TLVSVLKYLN SLCT

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.