CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67865
CDX89132
CDY25077
CDY43950

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27210.1	CDX67865	AT3G61790.1	21798944
AT1G27210.1	CDX89132	AT3G61790.1	21798944
AT1G27210.1	CDY25077	AT3G61790.1	21798944
AT1G27210.1	CDY43950	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016316.1-P	Field mustard	plastid	95.05	95.05
CDY62371	Canola	plastid	68.98	80.69
CDY16232	Canola	plastid	66.34	63.81
CDX68449	Canola	cytosol	7.59	62.16
AT1G27210.1	Thale cress	plastid	60.73	58.88
CDY14680	Canola	cytosol, plastid	66.67	57.06
CDY33611	Canola	cytosol, nucleus, plastid	37.79	50.11
CDY24496	Canola	plastid	37.29	48.71
VIT_01s0026g01020.t01	Wine grape	cytosol	42.57	40.0
KRH69431	Soybean	endoplasmic reticulum, nucleus	42.08	38.81
KRH74717	Soybean	plastid	42.41	38.53
CDY16768	Canola	cytosol	33.5	36.91
PGSC0003DMT400058293	Potato	extracellular	38.12	35.98
CDY00306	Canola	cytosol	33.0	34.42
Solyc05g006550.2.1	Tomato	cytosol	37.62	34.34
CDY56641	Canola	cytosol	32.67	34.32
CDX87253	Canola	cytosol	33.33	34.06
GSMUA_Achr7P02250_001	Banana	cytosol	28.05	30.63
Os02t0739900-01	Rice	cytosol, mitochondrion	29.7	29.41
Os06t0244700-01	Rice	cytosol	25.58	29.36
TraesCS6B01G341700.1	Wheat	mitochondrion	29.87	29.19
TraesCS6D01G290800.1	Wheat	mitochondrion	29.87	29.15
TraesCS7A01G236800.1	Wheat	cytosol	30.03	29.03
Zm00001d037271_P001	Maize	cytosol	29.37	28.99
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	29.21	28.92
Zm00001d044760_P001	Maize	cytosol	28.88	28.83
EES05553	Sorghum	cytosol	29.21	28.73
HORVU7Hr1G040280.1	Barley	peroxisome	29.37	28.71
TraesCS6A01G311500.1	Wheat	cytosol	27.72	28.52
KXG19701	Sorghum	cytosol	28.71	28.11
TraesCS7B01G103000.1	Wheat	plastid	30.53	26.2
TraesCS7D01G199100.1	Wheat	plastid	30.36	26.06
Zm00001d016462_P001	Maize	cytosol	17.0	24.29
HORVU6Hr1G076760.1	Barley	nucleus	22.77	22.4
Zm00001d017306_P002	Maize	cytosol	11.39	21.9
Zm00001d044701_P001	Maize	cytosol	15.35	19.1
CDY38410	Canola	nucleus	24.42	18.85
CDY29609	Canola	cytosol	22.77	17.85
CDX78782	Canola	nucleus	24.26	17.56
CDY29271	Canola	plastid	24.92	17.54
CDY07335	Canola	cytosol	22.44	16.41
CDX89282	Canola	plastid	24.92	15.88

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A078I974	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDY46411
ProteinID:CDY46411	ProteinID:CDY46411.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017
EnsemblPlantsGene:GSBRNA2T00083957001	InterPro:IPR011989	PANTHER:PTHR31355	PANTHER:PTHR31355:SF3	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like
UniParc:UPI0004EF002D	SEG:seg	:	:	:	:

Description

BnaA08g20190DBnaA08g20190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I974]

Coordinates

chrLK032666:+:9279..12137

Molecular Weight (calculated)

65578.5 Da

IEP (calculated)

8.550

GRAVY (calculated)

-0.394

Length

606 amino acids

Sequence
(BLAST)

001: MSVNGRFPAS PPVSLSPASS SSPSSHSQSP PDLKQRVIAC LNKLADRDTL SLAAAELDSI ARNLTHDSFA SFLNCIHNTD SSSKSPVRKH SVAVLSLMSR
101: HHGESLSPHL SKMVSTVIRR LRDPDSSVRS ACAAATADIS AHVTTQLFAS VAKPLIETLI QEGDSNVQTG AAVCLAASVE AAADPEPEQL RKSLPKIGKL
201: LKSEAFKAKA ALLSAVGSII TAGGAGSKPV LDWLVPVLVE FLSSEDWAAR KAAAEGLSRV SAAEEELAWE YKKACTAALE SRRFDKVKSV RETMNRALSQ
301: WKEVANDVDE ALLSPCTSSN IDVGFKSSRL KKSTPMIKRS THRSYVATRQ QKENLPRRNV TVSVASREEE KVKSGGADTI IKHTISEKSK EDKKVHVFGC
401: GLRSGSRVAP CSEDGDDSCD SVVKNGKDGV DEIRKDSEEL SLIREQLAMI ENQQSSLLEL LQKFMGSSQS GIQSLESRVS GLEMALDEIS CDLAVSNGRV
501: PKTSSCGGES CSKLPGAEFL NHKYWRKAEE RPMQTRSTAS DTAAHENSLD QGMQKRGSVF QKRSGRNQFQ DSMHTTLQKP TTRVDPTLAF GRAWVILVLD
601: GSHFFS

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.