Factsheet for GSMUA_Achr7P02250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P06970_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27210.1	GSMUA_Achr5P06970_001	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68449	Canola	cytosol	7.03	52.7
EES05553	Sorghum	cytosol	44.68	40.26
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	44.14	40.03
TraesCS6B01G341700.1	Wheat	mitochondrion	44.5	39.84
TraesCS6D01G290800.1	Wheat	mitochondrion	44.5	39.77
TraesCS6A01G311500.1	Wheat	cytosol	41.8	39.39
Os02t0739900-01	Rice	cytosol, mitochondrion	42.7	38.73
Zm00001d037271_P001	Maize	cytosol	42.16	38.11
Zm00001d044760_P001	Maize	cytosol	41.62	38.06
Os06t0244700-01	Rice	cytosol	35.68	37.5
HORVU7Hr1G040280.1	Barley	peroxisome	41.8	37.42
TraesCS7A01G236800.1	Wheat	cytosol	42.16	37.32
KXG19701	Sorghum	cytosol	40.36	36.19
VIT_17s0000g07470.t01	Wine grape	cytosol	39.64	34.48
TraesCS7D01G199100.1	Wheat	plastid	42.88	33.71
TraesCS7B01G103000.1	Wheat	plastid	42.16	33.14
KRH63453	Soybean	cytosol	37.12	33.12
KRH57001	Soybean	cytosol	36.04	32.73
KRH54469	Soybean	cytosol	36.58	32.58
Zm00001d016462_P001	Maize	cytosol	24.86	32.55
VIT_01s0026g01020.t01	Wine grape	cytosol	37.66	32.4
KRH03379	Soybean	cytosol, mitochondrion	35.5	32.3
PGSC0003DMT400063183	Potato	cytosol	35.5	31.72
Solyc03g113680.2.1	Tomato	nucleus	35.32	31.31
CDY62371	Canola	plastid	28.83	30.89
Bra035889.1-P	Field mustard	cytosol	30.09	29.72
Bra007853.1-P	Field mustard	nucleus	11.35	29.58
AT1G59850.1	Thale cress	plastid	26.31	29.32
CDY56641	Canola	cytosol	30.27	29.12
CDY00306	Canola	cytosol	30.27	28.92
CDY16768	Canola	cytosol	28.65	28.91
KRH74717	Soybean	plastid	34.41	28.64
AT5G62580.1	Thale cress	cytosol	31.53	28.46
CDY33611	Canola	cytosol, nucleus, plastid	23.24	28.23
CDY46411	Canola	plastid	30.63	28.05
KRH69431	Soybean	endoplasmic reticulum, nucleus	33.15	28.01
Bra016316.1-P	Field mustard	plastid	30.45	27.89
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	23.06	27.89
CDY24496	Canola	plastid	23.24	27.8
Bra010100.1-P	Field mustard	cytosol	29.01	27.76
AT1G27210.1	Thale cress	plastid	31.17	27.68
HORVU6Hr1G076760.1	Barley	nucleus	30.63	27.6
CDX87253	Canola	cytosol	29.37	27.49
PGSC0003DMT400058293	Potato	extracellular	30.27	26.17
CDY16232	Canola	plastid	29.01	25.56
Bra024646.1-P	Field mustard	plastid	29.37	25.55
Solyc05g006550.2.1	Tomato	cytosol	29.55	24.7
CDY14680	Canola	cytosol, plastid	30.63	24.01
Zm00001d044701_P001	Maize	cytosol	20.36	23.2
Zm00001d017306_P002	Maize	cytosol	10.45	18.41
GSMUA_Achr4P12500_001	Banana	mitochondrion	18.92	17.77
GSMUA_Achr9P11640_001	Banana	cytosol	23.6	15.21
GSMUA_Achr9P23120_001	Banana	mitochondrion	21.8	14.42
GSMUA_Achr9P02790_001	Banana	plastid	18.2	13.48

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	EnsemblPlantsGene:GSMUA_Achr7G02250_001	EnsemblPlants:GSMUA_Achr7P02250_001	EnsemblPlants:GSMUA_Achr7T02250_001	InterPro:IPR011989	UniProt:M0TE15
PANTHER:PTHR31355	PANTHER:PTHR31355:SF8	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI000295A5C9	SEG:seg

Description

HEAT repeat family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G02250_001]

Coordinates

chr7:+:1726464..1731931

Molecular Weight (calculated)

61135.2 Da

IEP (calculated)

10.405

GRAVY (calculated)

-0.443

Length

555 amino acids

Sequence
(BLAST)

001: MASKALQQQQ GGSNEEGVRQ RVNRCMMKLS DRDTEAMAAT ELDAIARELT ADAFPPFLSA IADARPTDKT PLRRHSLRLL SLLSHSHPPA AVAPHLPRML
101: AAALRRLRDP DSSVRAACVD AVRSMAAAHP PALVASLACD DWASRKAAAE SLSVLAIREK DLLTGFRSSC LSSFESRKFD KVKIVRDSMT RMLDVWKDIP
201: EINSRPKFST FFVDIASIRS MRNPKQRFLI IGCVLPIPAA SLGSGSIPSA KRFSSSRSPP PAALPIPTPR KNVPSIRNKK LSPPLFHKDE RRPSNWRVEI
301: SIAGAPGEVV NDEKLHNIRE HGGSEGNLRS RLETRRMLFE RNHEDTGNKL AGLKSASRMV PLQETGSLES TVGANTKDDE LNAGHKDSDL SLIRMQLVQI
401: ENQQSNLLEL LQKFIGNSQN GLHSLETRVH GLEMALDEIS HNLALSAGRI ANNDSAANTC CRLPGAEFLC AKFWRRTEGR SSSRFSTSEV QNLTEMETRG
501: SHKWDKRRLG VQGGLVVNPL AEIIPQSSAS PEATPIKMLK SATHENAITH AYRHK

Best Arabidopsis Sequence Match ( AT5G62580.1 )
(BLAST)

001: MATKNSKQNM SVLLTKLGDR DTFTMAAREL DLMARQIDPS SSSGNLQSFI SVILSVDTGD KPAVRKHCIH LLAVLSVSLP LNSLSPFLSK ILTRITRRLR
101: DPDSSIRSTC VAAVSAISSR TTKPPFYSAF MKPLADTLFT EQEVNAQIGA ALCLAAAIDS ASDPDPVRLG QTLLPRLEKL VKCNAFKAKS AGVVVIGSVI
201: GAGGLSGTSV SSGGLKGLVD CLLSFLVSED WAARKAAAEA LGRLATMERN ELGEFKAKCL KIFESRKYDK VKAVREVMNQ MMEAWKQVPD LSEEVSPPRS
301: NASSKGDASD GRYPSGSRVG STPAKSRTHL VNRSTPPGSS LATTARKQAN RKSIDQKKTS LTASLTKPNV RRRLEWKAGG ASIPTGVSLE DEQHCDHDEN
401: AKETSHSSHN TVQKLGGVSS SLNGNIPPSG ATMVTGHHVL SENPNSNNCK GLEDISLIRN QLVQIEQQQA NLMDLLQRFV GSSQHGMRGL ETRVHGLELA
501: LDEISYDLAV SNGRMSNGSS RNNCCLLPSG SFIKSKFWKK HDSKYSASRM STYRNRNAET TEIQNSRHRF NGSPGFIVNP LAEIRPDNDL QVCLTIEGRR
601: ETKPSKASET LKTTV

Arabidopsis Description

TOR1L3TORTIFOLIA1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.