CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16768	Canola	cytosol	73.19	78.91
CDY56641	Canola	cytosol	68.13	70.02
CDY00306	Canola	cytosol	66.44	67.81
AT5G62580.1	Thale cress	cytosol	64.59	62.28
CDX68449	Canola	cytosol	5.56	44.59
KRH57001	Soybean	cytosol	41.48	40.26
KRH03379	Soybean	cytosol, mitochondrion	40.98	39.84
PGSC0003DMT400063183	Potato	cytosol	41.48	39.61
KRH63453	Soybean	cytosol	41.15	39.23
KRH54469	Soybean	cytosol	41.15	39.17
VIT_17s0000g07470.t01	Wine grape	cytosol	41.99	39.03
Solyc03g113680.2.1	Tomato	nucleus	40.47	38.34
CDY33611	Canola	cytosol, nucleus, plastid	28.67	37.2
CDY24496	Canola	plastid	28.33	36.21
CDY62371	Canola	plastid	29.17	33.4
CDY46411	Canola	plastid	34.06	33.33
CDY16232	Canola	plastid	33.56	31.59
TraesCS7A01G236800.1	Wheat	cytosol	31.7	29.98
GSMUA_Achr7P02250_001	Banana	cytosol	27.49	29.37
HORVU7Hr1G040280.1	Barley	peroxisome	30.69	29.35
CDY14680	Canola	cytosol, plastid	34.91	29.24
Zm00001d044760_P001	Maize	cytosol	29.85	29.16
Zm00001d037271_P001	Maize	cytosol	30.02	28.99
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	29.68	28.76
Os02t0739900-01	Rice	cytosol, mitochondrion	29.68	28.76
Os06t0244700-01	Rice	cytosol	25.46	28.6
KXG19701	Sorghum	cytosol	29.85	28.59
EES05553	Sorghum	cytosol	29.51	28.41
TraesCS6A01G311500.1	Wheat	cytosol	28.16	28.35
TraesCS6D01G290800.1	Wheat	mitochondrion	29.68	28.34
TraesCS6B01G341700.1	Wheat	mitochondrion	29.51	28.23
TraesCS7B01G103000.1	Wheat	plastid	31.7	26.63
TraesCS7D01G199100.1	Wheat	plastid	31.37	26.35
Zm00001d016462_P001	Maize	cytosol	16.86	23.58
Zm00001d017306_P002	Maize	cytosol	12.48	23.49
HORVU6Hr1G076760.1	Barley	nucleus	23.1	22.24
Zm00001d044701_P001	Maize	cytosol	17.54	21.36
CDY38410	Canola	nucleus	22.93	17.32
CDX78782	Canola	nucleus	22.6	16.01
CDY29271	Canola	plastid	22.6	15.56
CDY29609	Canola	cytosol	19.39	14.88
CDY07335	Canola	cytosol	20.4	14.6
CDX89282	Canola	plastid	22.77	14.2

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDX87253	ProteinID:CDX87253
ProteinID:CDX87253.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	EnsemblPlantsGene:GSBRNA2T00146195001	InterPro:HEAT
InterPro:IPR011989	PFAM:PF02985	PANTHER:PTHR31355	PANTHER:PTHR31355:SF8	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like
UniParc:UPI0004EF0DAC	SEG:seg	:	:	:	:

Description

BnaC09g05680D

Coordinates

chrLK031849:+:1479862..1481884

Molecular Weight (calculated)

63874.6 Da

IEP (calculated)

9.268

GRAVY (calculated)

-0.238

Length

593 amino acids

Sequence
(BLAST)

001: MEKSSKQKMS ELLTKLGDRD TFTMAAKELD VMARNIDPTS GNLQSFISVV LSADAGDKPA VRKHCIHLLA VLSVSLPPNS LSPHLSKILS RVTRRLRDPD
101: SSVRSACVAA VSAIASRTTK PPFASAFVKP LSEALFTEQE VNAQIGAGLC LAAAIDAAED PDPVRLGTTL LPRLEKLVKC NTFKAKPAGL VVIGSVIGAG
201: GVSCGGLKGL VDCLVSVLSS EDWAARKAAA EALGRLATVE RNELGEFKAK ALKIFEGKRY DKVKAVREVM NQMMEAWTQV PDLSEEVSPP RSNASSKGSG
301: VASTPAKSRT RLVNRSTPPG SLLATAARSR TNVRSSDQKK TSSVPSYTKS NVRRRLELNA GVGASVRCGE PLEEEHHHHN ENTIEAGQMQ KLGGDASSLD
401: IQASGVTMAT GHYVLSENQN SSNNCKGLED MSLIRSQLVQ IEQQQSNLMD LLQRFVGSSQ HGMLSLETRV QGLEIALDEI SYDLAVSNGS KNNCCLIPPG
501: SFIRSKFWKK PDSMYSASRL ATYRNRNAET MGMQDSRKRF NGATGFIVNP LAEIRPGNES AGMLCSFAEA VLCLVYNIIK KHLFDSFAGL AHN

Best Arabidopsis Sequence Match ( AT5G62580.1 )
(BLAST)

001: MATKNSKQNM SVLLTKLGDR DTFTMAAREL DLMARQIDPS SSSGNLQSFI SVILSVDTGD KPAVRKHCIH LLAVLSVSLP LNSLSPFLSK ILTRITRRLR
101: DPDSSIRSTC VAAVSAISSR TTKPPFYSAF MKPLADTLFT EQEVNAQIGA ALCLAAAIDS ASDPDPVRLG QTLLPRLEKL VKCNAFKAKS AGVVVIGSVI
201: GAGGLSGTSV SSGGLKGLVD CLLSFLVSED WAARKAAAEA LGRLATMERN ELGEFKAKCL KIFESRKYDK VKAVREVMNQ MMEAWKQVPD LSEEVSPPRS
301: NASSKGDASD GRYPSGSRVG STPAKSRTHL VNRSTPPGSS LATTARKQAN RKSIDQKKTS LTASLTKPNV RRRLEWKAGG ASIPTGVSLE DEQHCDHDEN
401: AKETSHSSHN TVQKLGGVSS SLNGNIPPSG ATMVTGHHVL SENPNSNNCK GLEDISLIRN QLVQIEQQQA NLMDLLQRFV GSSQHGMRGL ETRVHGLELA
501: LDEISYDLAV SNGRMSNGSS RNNCCLLPSG SFIKSKFWKK HDSKYSASRM STYRNRNAET TEIQNSRHRF NGSPGFIVNP LAEIRPDNDL QVCLTIEGRR
601: ETKPSKASET LKTTV

Arabidopsis Description

TOR1L3TORTIFOLIA1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.