Factsheet for VIT_17s0000g07470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57001	Soybean	cytosol	54.55	56.96
KRH03379	Soybean	cytosol, mitochondrion	53.45	55.9
KRH63453	Soybean	cytosol	54.39	55.79
KRH54469	Soybean	cytosol	54.08	55.38
PGSC0003DMT400063183	Potato	cytosol	52.19	53.62
Solyc03g113680.2.1	Tomato	nucleus	50.94	51.92
VIT_01s0026g01020.t01	Wine grape	cytosol	52.04	51.47
CDY56641	Canola	cytosol	41.69	46.1
CDY00306	Canola	cytosol	41.54	45.61
Bra035889.1-P	Field mustard	cytosol	40.13	45.55
Bra010100.1-P	Field mustard	cytosol	40.6	44.66
CDY16768	Canola	cytosol	37.77	43.82
AT5G62580.1	Thale cress	cytosol	41.07	42.6
CDX87253	Canola	cytosol	39.03	41.99
GSMUA_Achr7P02250_001	Banana	cytosol	34.48	39.64
Zm00001d037271_P001	Maize	cytosol	35.58	36.97
Os06t0244700-01	Rice	cytosol	30.56	36.93
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	35.11	36.6
Os02t0739900-01	Rice	cytosol, mitochondrion	34.95	36.44
EES05553	Sorghum	cytosol	35.11	36.36
KXG19701	Sorghum	cytosol	34.95	36.03
TraesCS7A01G236800.1	Wheat	cytosol	35.27	35.89
TraesCS6B01G341700.1	Wheat	mitochondrion	34.8	35.81
TraesCS6D01G290800.1	Wheat	mitochondrion	34.48	35.43
TraesCS6A01G311500.1	Wheat	cytosol	32.29	34.97
Zm00001d044760_P001	Maize	cytosol	33.23	34.93
HORVU7Hr1G040280.1	Barley	peroxisome	33.54	34.52
TraesCS7B01G103000.1	Wheat	plastid	35.27	31.87
TraesCS7D01G199100.1	Wheat	plastid	34.8	31.44
HORVU6Hr1G076760.1	Barley	nucleus	27.59	28.57
Zm00001d016462_P001	Maize	cytosol	18.97	28.54
Zm00001d017306_P002	Maize	cytosol	12.85	26.03
Zm00001d044701_P001	Maize	cytosol	18.03	23.61
VIT_11s0065g00460.t01	Wine grape	cytosol	26.33	20.22
VIT_19s0090g00020.t01	Wine grape	plastid	25.71	17.48

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100263859	wikigene:100263859	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CCB43024	ProteinID:CCB43024.1	UniProt:F6GSY3	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	InterPro:IPR011989	EntrezGene:LOC100263859	wikigene:LOC100263859	PANTHER:PTHR31355	PANTHER:PTHR31355:SF8
SUPFAM:SSF48371	TIGR:TC57797	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0001985159	ArrayExpress:VIT_17s0000g07470	EnsemblPlantsGene:VIT_17s0000g07470
EnsemblPlants:VIT_17s0000g07470.t01	unigene:Vvi.21610	unigene:Vvi.598	RefSeq:XP_002280600	RefSeq:XP_002280600.1	SEG:seg

Description

No Description!

Coordinates

chr17:+:8408104..8412048

Molecular Weight (calculated)

70124.5 Da

IEP (calculated)

9.442

GRAVY (calculated)

-0.503

Length

638 amino acids

Sequence
(BLAST)

001: MDQPKQSSPQ NLKHRVFTCL TKLSDRDTQS IAATELESIA RTLTQDLLPP FLSCIHQTDP SDKSPVRKQC VRLLGILSET HGDALSPFLS KMLSNLIRRL
101: RDPDSAVRST CINAISAMSS HITKPPFSSI VKPLAETLFT EQDHNAQIGA SLCLASAIDA APDPDPALLR RLLPRIEKLL KCDSFKAKPA VLTLIGSIVE
201: AGGATSYNVV KNLVPCAVGF LSSEDWAARK AAAEVLVKLA VMERDMLSEF KSSCLKTFEA RRFDKVKAVR DTMNQMLGAW KEIPDVSNDV SPPPQSQSSS
301: KENASDGRYP LESRNSCTGG SEVPLMRKKS IPTSISPQLN SSSATTVRRR GPVDKSGSAM FRKLERKKAS DLKVEVTAPH APSVMRIHED GLKKKDEKAP
401: ERGENEKNRF TKPETRRVLF TKNSDDKMNK FGGFRSGSRV VPCQEENSET TVEVSNTTEV PHRNHKECED LSLIRKQLVQ IENQQSSLLN LLEKFMGSSQ
501: NGLRSLETRV HGLELALDEI SFDLAVSNRR MSSTDTAGAT CCMLPGADFL SSKFWRKTEG RGSTSRFSPS HATQSGTAMR YIAGKNDNAG TFKSENLRFR
601: LQGGGGFVVN PLAEIPSDSR DISEVSSNRI SKNAHETA

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.