Factsheet for Bra010100.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00306	Canola	cytosol	90.52	90.36
Bra035889.1-P	Field mustard	cytosol	69.48	71.71
AT5G62580.1	Thale cress	cytosol	67.59	63.74
KRH57001	Soybean	cytosol	44.14	41.9
KRH03379	Soybean	cytosol, mitochondrion	43.45	41.31
VIT_17s0000g07470.t01	Wine grape	cytosol	44.66	40.6
PGSC0003DMT400063183	Potato	cytosol	43.28	40.42
KRH63453	Soybean	cytosol	43.28	40.35
KRH54469	Soybean	cytosol	43.28	40.29
Solyc03g113680.2.1	Tomato	nucleus	42.59	39.46
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	28.45	35.95
Bra016316.1-P	Field mustard	plastid	35.0	33.5
Bra024646.1-P	Field mustard	plastid	34.83	31.66
Os02t0739900-01	Rice	cytosol, mitochondrion	31.38	29.74
Bra007853.1-P	Field mustard	nucleus	10.86	29.58
TraesCS7A01G236800.1	Wheat	cytosol	31.55	29.19
GSMUA_Achr7P02250_001	Banana	cytosol	27.76	29.01
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	30.52	28.92
TraesCS6A01G311500.1	Wheat	cytosol	29.14	28.69
EES05553	Sorghum	cytosol	30.34	28.57
TraesCS6D01G290800.1	Wheat	mitochondrion	30.34	28.34
Zm00001d037271_P001	Maize	cytosol	30.0	28.34
TraesCS6B01G341700.1	Wheat	mitochondrion	30.17	28.23
HORVU7Hr1G040280.1	Barley	peroxisome	30.0	28.06
Zm00001d044760_P001	Maize	cytosol	29.31	28.01
Os06t0244700-01	Rice	cytosol	25.17	27.65
KXG19701	Sorghum	cytosol	29.31	27.46
TraesCS7B01G103000.1	Wheat	plastid	31.55	25.92
TraesCS7D01G199100.1	Wheat	plastid	30.86	25.35
HORVU6Hr1G076760.1	Barley	nucleus	24.83	23.38
Zm00001d016462_P001	Maize	cytosol	16.72	22.88
Zm00001d017306_P002	Maize	cytosol	12.24	22.54
Zm00001d044701_P001	Maize	cytosol	16.9	20.12
Bra030470.1-P	Field mustard	cytosol	19.31	14.49
Bra026382.1-P	Field mustard	plastid	24.48	14.4

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra010100	EnsemblPlants:Bra010100.1
EnsemblPlants:Bra010100.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:HEAT	InterPro:IPR011989
UniProt:M4D0V1	PFAM:PF02985	PANTHER:PTHR31355	PANTHER:PTHR31355:SF8	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like
UniParc:UPI000253F6ED	SEG:seg	:	:	:	:

Description

AT5G62580 (E=3e-208) | binding

Coordinates

chrA06:+:19408407..19410424

Molecular Weight (calculated)

62449.5 Da

IEP (calculated)

10.086

GRAVY (calculated)

-0.331

Length

580 amino acids

Sequence
(BLAST)

001: MSVLLTKLGD RDTFTMAARE LDLMARQIDP SSGNLQSFIS VILSADTGDK PAVRKHCIHL LAVLSVSLPP NSLSPFLSKI LARVTRRLRD PDSSIRSTCV
101: AAVSAISSRT TKPPFASAFM KPLAEALFTE QEVNAQIGAA LCLAAAIDAA EDPDPVRLGE VLLPRVEKLV KCKAFKAKSA GVVVIGSVIG AGGVAGGGGL
201: KGLVDCLVSF LSSEDWAARK AAAEALGKLA TVERNGLGEF KAKSLKIFET KRYDKVKAVR DVMNQMMEAW RQVPDLSEEV SPPRSNASSK GDASDGRYPL
301: SASRVASTPG KPRTTPPGSS LATTARKRTN VKGSDQKKTS SVPSRVKSNA RRRLDWKAGG EPLGEEYHDH NENTKEVSHS NQEKMQKLGS VSSSGTGNLP
401: LSAANVVATG HHHVLSENQN SSNNCKGFED MSLIRSQLVQ IEQQQSNLMD LLQRFVGSSQ NGMRALETRV HGLELAMDEI SYDLAVSNGR MSNGSGRISC
501: CLIPPGSFIR SKFWKKPEQQ QYSAPRMATY RNRNAQTMGT QDSRQRFNGA AGFIVNPLAE VRPDHGSAGY TSFVLFSSCV

Best Arabidopsis Sequence Match ( AT5G62580.1 )
(BLAST)

001: MATKNSKQNM SVLLTKLGDR DTFTMAAREL DLMARQIDPS SSSGNLQSFI SVILSVDTGD KPAVRKHCIH LLAVLSVSLP LNSLSPFLSK ILTRITRRLR
101: DPDSSIRSTC VAAVSAISSR TTKPPFYSAF MKPLADTLFT EQEVNAQIGA ALCLAAAIDS ASDPDPVRLG QTLLPRLEKL VKCNAFKAKS AGVVVIGSVI
201: GAGGLSGTSV SSGGLKGLVD CLLSFLVSED WAARKAAAEA LGRLATMERN ELGEFKAKCL KIFESRKYDK VKAVREVMNQ MMEAWKQVPD LSEEVSPPRS
301: NASSKGDASD GRYPSGSRVG STPAKSRTHL VNRSTPPGSS LATTARKQAN RKSIDQKKTS LTASLTKPNV RRRLEWKAGG ASIPTGVSLE DEQHCDHDEN
401: AKETSHSSHN TVQKLGGVSS SLNGNIPPSG ATMVTGHHVL SENPNSNNCK GLEDISLIRN QLVQIEQQQA NLMDLLQRFV GSSQHGMRGL ETRVHGLELA
501: LDEISYDLAV SNGRMSNGSS RNNCCLLPSG SFIKSKFWKK HDSKYSASRM STYRNRNAET TEIQNSRHRF NGSPGFIVNP LAEIRPDNDL QVCLTIEGRR
601: ETKPSKASET LKTTV

Arabidopsis Description

TOR1L3TORTIFOLIA1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.