Factsheet for PGSC0003DMT400063183

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113680.2.1	Tomato	nucleus	92.11	91.37
VIT_17s0000g07470.t01	Wine grape	cytosol	53.62	52.19
KRH57001	Soybean	cytosol	46.54	47.3
KRH03379	Soybean	cytosol, mitochondrion	46.22	47.05
KRH63453	Soybean	cytosol	45.41	45.34
KRH54469	Soybean	cytosol	44.93	44.78
Bra035889.1-P	Field mustard	cytosol	39.77	43.95
CDY56641	Canola	cytosol	40.58	43.67
Bra010100.1-P	Field mustard	cytosol	40.42	43.28
CDY00306	Canola	cytosol	40.42	43.2
CDY16768	Canola	cytosol	37.52	42.36
CDX87253	Canola	cytosol	39.61	41.48
AT5G62580.1	Thale cress	cytosol	38.65	39.02
PGSC0003DMT400058293	Potato	extracellular	39.13	37.85
GSMUA_Achr7P02250_001	Banana	cytosol	31.72	35.5
Os02t0739900-01	Rice	cytosol, mitochondrion	34.62	35.13
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	34.62	35.13
EES05553	Sorghum	cytosol	34.78	35.06
TraesCS6B01G341700.1	Wheat	mitochondrion	33.66	33.71
TraesCS6A01G311500.1	Wheat	cytosol	31.72	33.45
TraesCS7A01G236800.1	Wheat	cytosol	33.66	33.33
TraesCS6D01G290800.1	Wheat	mitochondrion	33.33	33.33
KXG19701	Sorghum	cytosol	33.17	33.28
Zm00001d037271_P001	Maize	cytosol	32.85	33.22
HORVU7Hr1G040280.1	Barley	peroxisome	32.85	32.9
Os06t0244700-01	Rice	cytosol	27.86	32.77
Zm00001d044760_P001	Maize	cytosol	31.72	32.45
TraesCS7D01G199100.1	Wheat	plastid	34.14	30.03
TraesCS7B01G103000.1	Wheat	plastid	33.66	29.6
Zm00001d016462_P001	Maize	cytosol	19.0	27.83
HORVU6Hr1G076760.1	Barley	nucleus	26.25	26.46
Zm00001d017306_P002	Maize	cytosol	12.24	24.13
Zm00001d044701_P001	Maize	cytosol	18.04	23.0
PGSC0003DMT400035319	Potato	nucleus	24.32	19.02
PGSC0003DMT400037390	Potato	plastid	24.15	17.4

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102604035	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005874	GO:GO:0008017	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	UniProt:M1CA75
EnsemblPlantsGene:PGSC0003DMG400024575	PGSC:PGSC0003DMG400024575	EnsemblPlants:PGSC0003DMT400063183	PFscan:PS50077	PANTHER:PTHR31355	PANTHER:PTHR31355:SF8
SMART:SM01349	SUPFAM:SSF48371	InterPro:TOG	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI000296D956	RefSeq:XP_006344991.1
SEG:seg	:	:	:	:	:

Description

Microtubule-associated protein TORTIFOLIA1 [Source:PGSC_GENE;Acc:PGSC0003DMG400024575]

Coordinates

chr3:-:53564130..53568654

Molecular Weight (calculated)

67099.7 Da

IEP (calculated)

8.894

GRAVY (calculated)

-0.375

Length

621 amino acids

Sequence
(BLAST)

001: MSVHSKQNQN QTRDMKHRVL TCLHKLSDRD THSAAASELE SIAKTLSPEA IPPFVSSISV TDSSDKSPVR KQCLRLISLL SEHHGDSLSP HLSKLLTAVV
101: RRLRDADSAV RTACVTACAS ISSHLTKPPF SSIIKPFLEA LFTEQEMNSQ IGAALCLSAA IEASPDPDIA CLRKSLPRFE KLLKSDSFKA KAALLTMIGS
201: VIAVGGASSQ QIVRNLVPYL VEFVSSDDWA ARKASAEALL RLAAVEGDAL SEFKAPCLKT FEAKRFDKVK AVREAMNQML EAWKGIPDLS DDGSPLPLSN
301: SSSKENASDG RYPPGLKTSR AVSSSAPSVK RPSNKSSVAD NSTAPAAHKG PAIFRKLDRK KPWKVEVSAP HGSSADYHQN KDGIQLGKDE ELETHTQPGV
401: KRTLFSKITN ETRNSVVKAG CRVVPYQDEI SESTVVVSNE TEDLCRNPKD CEDLSLIRKQ LAQIETQQSN LLDLLQKFMG SSQSGMHSLE TRVHGLELAL
501: DEISFDLAMS TGKMSNTNSA SMCCKLPGAE FLTSKLWKKT EGRGATSHFS ASGGTSSSAG LISNVAGQNG NGERLKLENR TYRLHSSRGF IVNPLAEIHG
601: DPQRISEPSV GGVSKSLRNG V

Best Arabidopsis Sequence Match ( AT5G62580.1 )
(BLAST)

001: MATKNSKQNM SVLLTKLGDR DTFTMAAREL DLMARQIDPS SSSGNLQSFI SVILSVDTGD KPAVRKHCIH LLAVLSVSLP LNSLSPFLSK ILTRITRRLR
101: DPDSSIRSTC VAAVSAISSR TTKPPFYSAF MKPLADTLFT EQEVNAQIGA ALCLAAAIDS ASDPDPVRLG QTLLPRLEKL VKCNAFKAKS AGVVVIGSVI
201: GAGGLSGTSV SSGGLKGLVD CLLSFLVSED WAARKAAAEA LGRLATMERN ELGEFKAKCL KIFESRKYDK VKAVREVMNQ MMEAWKQVPD LSEEVSPPRS
301: NASSKGDASD GRYPSGSRVG STPAKSRTHL VNRSTPPGSS LATTARKQAN RKSIDQKKTS LTASLTKPNV RRRLEWKAGG ASIPTGVSLE DEQHCDHDEN
401: AKETSHSSHN TVQKLGGVSS SLNGNIPPSG ATMVTGHHVL SENPNSNNCK GLEDISLIRN QLVQIEQQQA NLMDLLQRFV GSSQHGMRGL ETRVHGLELA
501: LDEISYDLAV SNGRMSNGSS RNNCCLLPSG SFIKSKFWKK HDSKYSASRM STYRNRNAET TEIQNSRHRF NGSPGFIVNP LAEIRPDNDL QVCLTIEGRR
601: ETKPSKASET LKTTV

Arabidopsis Description

TOR1L3TORTIFOLIA1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPR6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.