Factsheet for VIT_19s0090g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g04340.t01
VIT_06s0061g00780.t01
VIT_13s0019g00640.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27060.1	VIT_06s0004g04340.t01	AT5G02530.1	21798944
AT4G27060.1	VIT_13s0019g00640.t01	AT5G02530.1	21798944
AT4G27060.1	VIT_06s0061g00780.t01	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006350.2.1	Tomato	plastid	60.34	65.51
PGSC0003DMT400037390	Potato	plastid	58.42	63.57
KRH46114	Soybean	plastid	62.58	63.39
KRG98830	Soybean	plastid	58.96	59.91
GSMUA_Achr9P11640_001	Banana	cytosol	50.96	55.52
Bra030470.1-P	Field mustard	cytosol	45.63	55.37
CDY29609	Canola	cytosol	45.63	55.37
GSMUA_Achr9P02790_001	Banana	plastid	44.14	55.27
HORVU2Hr1G046160.2	Barley	cytosol, plastid	40.51	54.52
AT1G50890.1	Thale cress	plastid	45.74	52.25
Os07t0520400-01	Rice	cytosol, mitochondrion, nucleus, plastid	48.72	51.06
CDY29271	Canola	plastid	46.7	50.87
TraesCS2B01G246900.8	Wheat	plastid	47.65	50.62
TraesCS2A01G221200.6	Wheat	plastid	47.76	50.62
TraesCS2D01G226900.1	Wheat	plastid	47.44	50.28
CDY07335	Canola	cytosol	44.35	50.18
AT4G27060.1	Thale cress	plastid	46.16	50.12
EER99458	Sorghum	plastid	48.19	49.02
Zm00001d021641_P002	Maize	plastid	48.19	48.76
CDX89282	Canola	plastid	46.7	46.06
Zm00001d006504_P005	Maize	plastid	43.92	44.35
Bra026382.1-P	Field mustard	plastid	45.84	43.61
VIT_11s0065g00460.t01	Wine grape	cytosol	23.67	26.71
VIT_01s0026g01020.t01	Wine grape	cytosol	18.12	26.36
VIT_17s0000g07470.t01	Wine grape	cytosol	17.48	25.71

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100247015	MapMan:20.1.5.3	InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:CCB50637
ProteinID:CCB50637.1	ncoils:Coil	UniProt:F6HEN2	EMBL:FN595751	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007275	GO:GO:0008017	GO:GO:0008150	GO:GO:0009653	GO:GO:0009826
GO:GO:0009987	GO:GO:0010005	GO:GO:0010031	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007
InterPro:IPR011989	PANTHER:PTHR31355	PANTHER:PTHR31355:SF7	SMART:SM01349	SUPFAM:SSF48371	InterPro:TOG
InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI00021098A1	ArrayExpress:VIT_19s0090g00020	EnsemblPlantsGene:VIT_19s0090g00020	EnsemblPlants:VIT_19s0090g00020.t01	RefSeq:XP_010644421.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:6224946..6230948

Molecular Weight (calculated)

101187.0 Da

IEP (calculated)

5.143

GRAVY (calculated)

-0.477

Length

938 amino acids

Sequence
(BLAST)

001: MASGGTKSSK PAKPPNPSST SQSSVRSTSS SVSTHLAMVE LKQRILTSLS KLSDRDTHQI AVDDLHNLIQ NLSTDSGVSI LLNCLYEASS DPKPLVKKES
101: LRLLALLCTS HPDSTSSHLT KIISHIVRRL KDSDTGVRDA CRDAIGTLSS LYLKGDGGGG DNGGLGSVVS LFVKPLFEAM IEQNKGVQSG AAMCLAKMVE
201: CASDPPVGAF QKLCSRVCKL LNNPNFLAKA ALLPVVGSLS QVGAIAPQSL EAVLQSIHDC LGSPDWATRK AAADTLSTLA MHSNNLIMDG ATSTLAALEA
301: CRFDKIKPVR DSMTEALQLW KKVAGKGDGV SDDQKATSHD GENSEPAEFS DKNGPKVSNP GERKAEASGK DSSNGSSPAN DSVSKTKGGS IPDKAVGILK
401: KKVPAALTDK ELNPEFFQKL ETRGSDDLPV EVVVPRRCLN SANSHNEEES EPNDADLRGR SNLMEPDDVH GSVNIKYRNA ERGNAGLFSK QRDFDEVARD
501: KWADERVNGK DSRTRAFDID DRIDINQRES SGSRVGFSKT DVQSEGSFMN NKGNWLAIQR QLLQLERQQA HLMNMLQDFM GGSHDSMVTL ENRVRGLERV
601: VEDMARDLSI SSGRRGGNFM VGFEGSSNRS LGKYNGYPDY SSAKLGRGSD GRIPFGERFG PSDGIASGMR GRGPPWRSDM AEAWDFPTYG APKNGQMGSR
701: RALVSGPVDG RSPKAEHESD QVGNRRAWDK GAAPVRFGEG PSARSVWQAS KDEATLEAIR VAGEDSGATR TARVAMPELT AEAMGDDNVV PERDPVWTSW
801: SNAMDALHVG DMDSAYAEVL STGDDLLLVK LMDRSGPVID QLSNDVASEI LHAVGQFLLE QNLFDICLSW IQQLVDVVME NGPDIMGIPI EVKRELLLNL
901: NEASATTDPP EDWEGATPDQ LLLQLASAWG IDLQQLEK

Best Arabidopsis Sequence Match ( AT4G27060.1 )
(BLAST)

001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK

Arabidopsis Description

TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.