CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67865
CDX89132
CDY25077
CDY43950

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27210.1	CDX67865	AT3G61790.1	21798944
AT1G27210.1	CDX89132	AT3G61790.1	21798944
AT1G27210.1	CDY25077	AT3G61790.1	21798944
AT1G27210.1	CDY43950	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024646.1-P	Field mustard	plastid	95.87	94.67
CDY14680	Canola	cytosol, plastid	82.38	73.31
CDY62371	Canola	plastid	59.52	72.39
AT1G27210.1	Thale cress	plastid	69.52	70.08
CDY46411	Canola	plastid	63.81	66.34
CDX68449	Canola	cytosol	7.46	63.51
CDY33611	Canola	cytosol, nucleus, plastid	36.35	50.11
CDY24496	Canola	plastid	36.67	49.78
KRH69431	Soybean	endoplasmic reticulum, nucleus	42.54	40.79
KRH74717	Soybean	plastid	43.17	40.78
VIT_01s0026g01020.t01	Wine grape	cytosol	41.43	40.47
CDY16768	Canola	cytosol	32.86	37.64
PGSC0003DMT400058293	Potato	extracellular	38.1	37.38
Solyc05g006550.2.1	Tomato	cytosol	37.94	35.99
CDY00306	Canola	cytosol	32.7	35.46
CDY56641	Canola	cytosol	32.38	35.36
CDX87253	Canola	cytosol	31.59	33.56
Zm00001d037271_P001	Maize	cytosol	29.84	30.62
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	29.21	30.07
Os02t0739900-01	Rice	cytosol, mitochondrion	29.21	30.07
HORVU7Hr1G040280.1	Barley	peroxisome	29.52	30.0
TraesCS7A01G236800.1	Wheat	cytosol	29.84	29.98
EES05553	Sorghum	cytosol	29.21	29.87
Zm00001d044760_P001	Maize	cytosol	28.57	29.65
Os06t0244700-01	Rice	cytosol	24.76	29.55
KXG19701	Sorghum	cytosol	28.89	29.4
TraesCS6B01G341700.1	Wheat	mitochondrion	28.89	29.35
GSMUA_Achr7P02250_001	Banana	cytosol	25.56	29.01
TraesCS6D01G290800.1	Wheat	mitochondrion	28.41	28.82
TraesCS6A01G311500.1	Wheat	cytosol	26.35	28.18
TraesCS7B01G103000.1	Wheat	plastid	30.16	26.91
TraesCS7D01G199100.1	Wheat	plastid	29.84	26.63
Zm00001d016462_P001	Maize	cytosol	15.56	23.11
HORVU6Hr1G076760.1	Barley	nucleus	21.9	22.4
Zm00001d017306_P002	Maize	cytosol	10.79	21.59
CDY38410	Canola	nucleus	25.4	20.38
Zm00001d044701_P001	Maize	cytosol	15.56	20.12
CDX78782	Canola	nucleus	25.08	18.88
CDY29271	Canola	plastid	23.97	17.54
CDY29609	Canola	cytosol	20.48	16.69
CDX89282	Canola	plastid	24.29	16.09
CDY07335	Canola	cytosol	19.84	15.08

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A078FTR0	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDY16232
ProteinID:CDY16232	ProteinID:CDY16232.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017
EnsemblPlantsGene:GSBRNA2T00090692001	InterPro:HEAT	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PFAM:PF02985
PFscan:PS50077	PANTHER:PTHR31355	PANTHER:PTHR31355:SF3	SUPFAM:SSF48371	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0004EF2FAF
SEG:seg	:	:	:	:	:

Description

BnaA09g29660DBnaA09g29660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTR0]

Coordinates

chrLK032061:-:665886..668693

Molecular Weight (calculated)

67450.5 Da

IEP (calculated)

8.430

GRAVY (calculated)

-0.459

Length

630 amino acids

Sequence
(BLAST)

001: MSIHGRFPPS PPVSSSPASS SSPNSQSPSP PDLKQRVIAC LNKLADRDTL ALAAAELDSI ARSLTHDSFS SFLSCIHNTD SSCKSPVRKQ CVAVLSLMSR
101: HHGDSLSPHL AKMVSTVIRR LRDPDSSVRS ACAAATADIS AHVTAQPFTS VAKPLIETLI QEGDSNAQIG AALCLAAAVE AAADPESEQL RKSLPKIGKL
201: LKSEAFKAKA ALLSAVGSII TAGGAGTKPV LDWLVPVLIE FLSSEDWAAR KSAAEALGKV AAAEELASQY KKASTAALES RRFDKVKSVR ETMNQALSQW
301: KEVSSGLDEA LLSPSRSSTD DGGSIGCFSS VTRSSSIEVG YKSSRPKKAT PIMKRSPSLP VSRSYGTTRQ QKENLPKRNV TMLVAASIVD DKKGPQFPPV
401: KQSLEDRNDE ASSGGPDIIK HTISEKSRED KKGHGFCGGL RSGSRVAPCS DDGDDSCDPV VKKCKDDVDE SRKDNEELSL IREQLAMIEN QQSSLLDLLQ
501: KFMGSSQSGI QSLESRVSGL EMALDELSCD LAVSNGRVPK SNSCGGESCS KLPGTEFLSP KFWRKTEDRP MQTRTRNAAS EMAAQENSFD QGISTDVNKV
601: GQRGGSSVYQ KRSARNQFQD SMHTTTRLST

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.