CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97189
KRH68916

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27210.1	KRG97189	AT3G61790.1	21798944
AT1G27210.1	KRH68916	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74717	Soybean	plastid	88.28	86.96
CDX68449	Canola	cytosol	5.63	50.0
VIT_01s0026g01020.t01	Wine grape	cytosol	45.97	46.82
KRH54469	Soybean	cytosol	42.62	44.94
CDY62371	Canola	plastid	34.55	43.82
AT1G59850.1	Thale cress	plastid	32.88	43.37
Bra035420.1-P	Field mustard	cytosol, nucleus, plastid	30.29	43.36
KRH63453	Soybean	cytosol	40.94	43.25
CDY24496	Canola	plastid	30.29	42.89
Bra016316.1-P	Field mustard	plastid	39.42	42.74
KRH03379	Soybean	cytosol, mitochondrion	39.57	42.62
CDY16232	Canola	plastid	40.79	42.54
CDY33611	Canola	cytosol, nucleus, plastid	29.53	42.45
Bra024646.1-P	Field mustard	plastid	40.94	42.16
AT1G27210.1	Thale cress	plastid	40.03	42.08
CDY46411	Canola	plastid	38.81	42.08
KRH57001	Soybean	cytosol	38.97	41.9
PGSC0003DMT400058293	Potato	extracellular	37.9	38.78
CDY14680	Canola	cytosol, plastid	40.49	37.57
Solyc05g006550.2.1	Tomato	cytosol	37.75	37.35
Os02t0739900-01	Rice	cytosol, mitochondrion	31.05	33.33
GSMUA_Achr7P02250_001	Banana	cytosol	28.01	33.15
Zm00001d037271_P001	Maize	cytosol	30.9	33.06
EES05553	Sorghum	cytosol	30.9	32.95
Zm00001d017987_P003	Maize	cytosol, mitochondrion, nucleus, plastid	30.29	32.52
TraesCS7A01G236800.1	Wheat	cytosol	30.9	32.38
TraesCS6D01G290800.1	Wheat	mitochondrion	30.44	32.21
TraesCS6B01G341700.1	Wheat	mitochondrion	30.29	32.1
KXG19701	Sorghum	cytosol	30.14	31.99
Bra007853.1-P	Field mustard	nucleus	10.35	31.92
Zm00001d044760_P001	Maize	cytosol	29.38	31.8
TraesCS6A01G311500.1	Wheat	cytosol	28.31	31.58
HORVU7Hr1G040280.1	Barley	peroxisome	29.68	31.45
Os06t0244700-01	Rice	cytosol	24.51	30.49
TraesCS7D01G199100.1	Wheat	plastid	30.75	28.61
TraesCS7B01G103000.1	Wheat	plastid	30.44	28.33
Zm00001d016462_P001	Maize	cytosol	16.74	25.94
HORVU6Hr1G076760.1	Barley	nucleus	23.59	25.16
Zm00001d044701_P001	Maize	cytosol	17.05	23.0
Zm00001d017306_P002	Maize	cytosol	10.65	22.22
KRH74132	Soybean	cytosol, endoplasmic reticulum, nucleus	21.46	17.52
KRG98830	Soybean	plastid	23.74	16.9
KRH46114	Soybean	plastid	23.74	16.85

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100527301	MapMan:35.1	EMBL:ACUP02000707	InterPro:ARM-like	InterPro:ARM-type_fold
ncoils:Coil	EnsemblPlantsGene:GLYMA_02G026600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	InterPro:HEAT
InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	UniProt:K7K632	EnsemblPlants:KRH69431	ProteinID:KRH69431
ProteinID:KRH69431.1	PFAM:PF02985	PFscan:PS50077	PANTHER:PTHR31355	PANTHER:PTHR31355:SF15	SUPFAM:SSF48371
InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI000296A6B9	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:2380494..2385944

Molecular Weight (calculated)

71722.7 Da

IEP (calculated)

8.625

GRAVY (calculated)

-0.436

Length

657 amino acids

Sequence
(BLAST)

001: MSSRRHSLSG PPPLSGTEST QNLRQRVITC LNKLSDRDTL AGAAAELESI ARTLNHDSFS SFLSCIHNTD SSSKAPVRKQ CVHLLNVLSR FHGEALWPFI
101: SKMLATVLRR LRDSDSAVRS ACVDAVASMS SRITGPSFSA AFLRPLMDAL AQEQEANAQI GAALCLAAAV EAAPDPDAEA LRRSALPRLG KLVKSEACRA
201: RAALLVLIGS VVGAGGASSR GAVNWLVPCL VEFLGSKDWT VRKAAAEALA KVASVERDLA SQHKVLCLNS LQNRRFDKIK VVRETMNRAL ETWKEVTEDA
301: PAYVKSECAS VGTDDGKSQC VSKSSPDVGS KLSSKTAPAN RSPPSVISFM SSMKRESSLK SNEKHLRMGT LNHQGHEKSS NEKRETPFSR SSHSNLSRED
401: DIKRCDVEVS KPPPYQNGVN SRAEIKRVLF SKVSDEKMRR FSSSKSCVVP CIDDDDLDAN EVCESPQDVE DFALIREQLL QIENQQSNLL DLLQRFIGSS
501: QSGMNSLESR VHGLEIALDE ISQDLAVPGA RVSNIDATED TCCKLPGTDF LSSKFWKKTE GRYSTSRFSL GSIPSTNAVH NATNKDGSRE ILTANNSRLQ
601: HGKGGYFVNP SAEVQSDLKG HHTYKVSKNM VQDAMRRYDG IQPATESLRN QNIRSSV

Best Arabidopsis Sequence Match ( AT1G27210.1 )
(BLAST)

001: MSVHGRFPAS PPISLSPSSS STSPSSQSPS TPPDLKQRVI ACLNKLADRD TLALASAELD SIARNLTHDS FSPFLNCIHN TDSSVKSPVR KQCVALLSVL
101: SRYHGDSLTP HLAKMVSTVI RRLRDPDSSV RSACAVATAD MSAHVTRQPF ASVAKPLIET LIQEGDSNLQ IGAALCLAAS VDAATDPESE QLRKSLPKIG
201: KLLKSDGFKA KAALLSAVGS IITAGGAGTK PVLDWLVPVL IEFLSSEDWA ARKSAAEALG KVATAEDLAS QYKKTCTTAL ESRRFDKVKS VRETMNRALN
301: LWKEVSTDDE ASLSPSRSST DDGNIGCFSS VTRSSTIDVG LKSARPKKVT PIMKRSPSLP VNRSYAATRQ KENLPKRNQG NMTMLVEEAS SVDNKGPHFT
401: PVKKSSEETE EKANSGGPDI IKHTISEKSR EDSKVSSFGG LRSGSRVAPC SDDGDSVKNC KDDVEESKKD SEELSLIREQ LALIENQQSS LLDLLQKFMG
501: TSQSGIQSLE SRVSGLEMAL DEISCDLAVS NGRVPRNSSG CAGDSCSKLP GTEFLSPKFW RKTEERPRNR NTANEMAAYD QGMRESTDTN NGQRGGSVFQ
601: KRSRRDQFQD CMHTTLQKPT TRLST

Arabidopsis Description

TOR1L4TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.