CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, endoplasmic reticulum

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0065g00460.t01	Wine grape	cytosol	48.82	47.29
PGSC0003DMT400035319	Potato	nucleus	41.49	42.07
Solyc07g042580.2.1	Tomato	cytosol	43.48	42.02
Zm00001d018800_P001	Maize	extracellular, mitochondrion	8.07	41.14
AT2G07170.1	Thale cress	cytosol	37.89	37.2
CDY38410	Canola	nucleus	35.03	35.92
CDX78782	Canola	nucleus	37.14	35.72
GSMUA_Achr4P12500_001	Banana	mitochondrion	25.71	35.03
Os09t0560000-01	Rice	cytosol	35.78	34.57
EER99353	Sorghum	cytosol	35.16	33.81
TraesCS5B01G365600.1	Wheat	cytosol	34.66	33.7
HORVU5Hr1G089280.1	Barley	cytosol	34.66	33.45
TraesCS5D01G372700.1	Wheat	cytosol	34.41	33.41
Zm00001d021378_P007	Maize	cytosol	35.03	33.25
GSMUA_Achr9P23120_001	Banana	mitochondrion	34.66	33.25
TraesCS5A01G363500.1	Wheat	cytosol	34.16	33.17
KRH57001	Soybean	cytosol	19.01	25.04
KRH03379	Soybean	cytosol, mitochondrion	18.88	24.92
KRH63453	Soybean	cytosol	18.39	23.79
KRH54469	Soybean	cytosol	17.39	22.47
Zm00001d013733_P002	Maize	mitochondrion	7.83	21.8
KRH74717	Soybean	plastid	17.89	21.59
KRH69431	Soybean	endoplasmic reticulum, nucleus	17.52	21.46
KRG98830	Soybean	plastid	24.1	21.02
KRH46114	Soybean	plastid	23.98	20.84

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100783065	MapMan:35.1	EMBL:ACUP02000005	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlantsGene:GLYMA_01G001200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	UniProt:I1J4A1	InterPro:IPR011989
EnsemblPlants:KRH74132	ProteinID:KRH74132	ProteinID:KRH74132.1	PANTHER:PTHR31355	PANTHER:PTHR31355:SF5	SMART:SM01349
SUPFAM:SSF48371	InterPro:TOG	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI0002336B99	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:221661..225775

Molecular Weight (calculated)

90063.7 Da

IEP (calculated)

7.792

GRAVY (calculated)

-0.381

Length

805 amino acids

Sequence
(BLAST)

001: MKRAQGNGGL EMKQRIVGAL NKVGDRDTQQ IGMEELDRMA QGLRAEGIWS FLSCILDSDW EQKASIRKEC VRLMGTLATY YDGLVLPHLP KMVASIVKRL
101: RDPDSVVRDV CVNTVALLAS KLGRDGEDKV FVVLVRPIFE ALGEQNKHVQ SSSALCLARI IDNTPHPPLS LLHKMLSRTL KLLKNPHFIA KPALLDFTRS
201: IILAGGAPTH NILSAAISSI QDSLKHSDWS TRKAASLALA DIALSAASFL GFFRASCLQS LESCRFDKVK PVRDAVMQAL KYWTILPAPP DTPDPSETGS
301: SLKENICRGD SSDLSSTTTE SRHIQKVNMK STMGRIPFSV KNYARNNHQK PDDWDVQVAV PRPHSLVEFQ NKESESCSVT KQPLETMSAD VTSMQDVGYE
401: YVPMDDKQEC SSVSNPPTDN FETKFLSASH DCFIQKMPIA RSQRFSEEIT SDERVKMQHP TSSDSTVTEP THQTAHECCM QMANEMICIQ NQLSDIEIKQ
501: ANMMHQLQMF TTGIMDALST IQSRITGLEN VFDRLSQESL QRGRHSYSEN SKLGRQSENV ASPRFSICTP TPRPSVEINN KQSDSMSVKN SESWEKKAFS
601: RSQPRIHSGD SLDMWKSNKV KATRKFTEKD VLNSSSKDTL QMGSVKNDGI FSATRITNAR NDCSESNNNY WKHVKRLVCE GDLNSAYREA LCFSDEFILV
701: ELLNTTGPVI ESLSVKTMNV LLSTLASYLL EGKLFNTIIP WLQQIVEMST IHGPNCIAIS IEAKKHLLSA VQEAMNLHFF SHAERRRVAE LAMKLHHIWG
801: KITES

Best Arabidopsis Sequence Match ( AT2G07170.1 )
(BLAST)

001: MKTNMQVKGR GGNMKANTNT QQVIFELKKK VVIALNKLAD RDTYQRGVDE LEKTVEHLAP DKVSCFLSCI LDTDSEQKSA VRKECIRLMG TLARFHEGLV
101: GPYLGKMVSS IVKRLKDPDS VVRDACIETM GVLASKMSCY EDQNFGVFVS LVKPLFEAIG DQNKYVQSGA ALCLARVIDS SPEAPVAIIQ RMLMRTVKLL
201: NNSHFIAKPA VIELNRSIIL AGGATSKSVL SSAMSSFQDA LKNKDWTTRK AASVALMEIA ATGEKFLGPL KASCICSLES CRFDKVKPVR DSVILALKYW
301: KGVPGSDSPE PSETESSVKE SYNGARESSE LFSTSDFKVK DGMSIKYVTD VTRKKVPVSA RQPPTRYNDD PRKSNQDDWH IEIAVPESSF VSKVDLYNEE
401: SEGSCITKTF AETTNTPEVT YEYIPMKDKA DSYVTGGVNE NDDIKSITVS SSSFRASGMV NPAITSKNYA AEETDLEEQP FSTQVKDRTS LDSFVTVSSS
501: QINHDCCAKI ANEMASVRKQ LSDIENKQSR LIDQLQVFST GIMNNFSVLQ SKVSSLEYAV EGIAQNAALH SDISNSNFVK HNQGSTISPR LSSCTSRTST
601: DIRNRQSTLS TSKYSRENKT HVRSRLNESQ GMEKTRSNPL GKTGQLHTRE DIWNNIGQGR QTLIQTRTSS DSIQSIRQQY AEVMSGTRKP VTGVSCEDVV
701: ESEYLQVLSS GDELALVELL DRTGPVLESM SSQTINEILS ILLSYLLERR FMNSILPWLH QVADLSTTNG ANYLIPSARK RAQVLSAIQE ASGMDFSNLA
801: ERRAVTQIAM KLRKLWGKCS

Arabidopsis Description

TOR1L2TORTIFOLIA1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IK92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.