Factsheet for Solyc11g066420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22890.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G22890.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G22890.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G22890.1	Solyc06g072990.1.1	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001105	Potato	nucleus	78.12	94.34
GSMUA_Achr1P15330_001	Banana	cytosol	38.54	52.67
VIT_06s0061g00780.t01	Wine grape	nucleus	53.12	52.31
CDY09179	Canola	nucleus	40.89	48.46
GSMUA_Achr11P...	Banana	nucleus	41.15	46.47
KRH26538	Soybean	nucleus, plastid	49.22	46.1
CDX74505	Canola	nucleus	44.27	45.21
CDX98183	Canola	nucleus	44.27	45.21
CDY26966	Canola	nucleus	44.27	45.21
CDY31715	Canola	nucleus	44.27	45.21
Bra002438.1-P	Field mustard	nucleus	44.27	45.21
CDY26965	Canola	nucleus	42.71	44.81
CDY69109	Canola	nucleus	43.23	44.62
AT5G22890.1	Thale cress	nucleus	43.23	44.5
CDY09178	Canola	nucleus	42.71	44.44
Os08t0562300-01	Rice	nucleus	38.8	38.7
TraesCS1A01G060200.1	Wheat	nucleus	38.28	38.28
TraesCS1D01G061200.1	Wheat	nucleus	38.28	37.98
OQU80698	Sorghum	nucleus	41.93	37.88
TraesCS1B01G078700.1	Wheat	nucleus	38.54	37.76
Zm00001d031895_P001	Maize	nucleus	40.89	37.47
Bra020223.1-P	Field mustard	nucleus	28.12	36.36
Os04t0165200-01	Rice	nucleus	34.38	35.58
Bra020224.1-P	Field mustard	nucleus	27.86	35.55
Solyc06g065440.1.1	Tomato	cytosol	31.77	34.76
Solyc04g056320.1.1	Tomato	nucleus	30.47	31.37
Bra002437.1-P	Field mustard	nucleus	19.27	29.72
Solyc11g017140.1.1	Tomato	nucleus	34.11	27.01
Solyc01g087050.2.1	Tomato	nucleus	19.53	25.17
Solyc04g074320.1.1	Tomato	nucleus	17.45	24.54
Solyc05g009770.1.1	Tomato	nucleus	17.71	23.78
Solyc11g062060.1.1	Tomato	nucleus	15.89	23.37
Solyc03g059270.2.1	Tomato	nucleus	14.32	16.08
Solyc06g074360.2.1	Tomato	nucleus	7.81	14.22

Protein Annotations

EnsemblPlants:Solyc11g066420.1.1	EnsemblPlantsGene:Solyc11g066420.1	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF41	PFAM:PF00096
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002769E35
UniProt:K4D9Q0	MapMan:15.5.15	:	:	:	:

Description

No Description!

Coordinates

chr11:+:52198082..52199236

Molecular Weight (calculated)

43360.1 Da

IEP (calculated)

8.677

GRAVY (calculated)

-0.674

Length

384 amino acids

Sequence
(BLAST)

001: MIQGTSSSAN NPQNIPLYSS NHHPNNNIQE DIFSSSSSSY QQNSFLFNLS LLKEKVHQVQ SLATMFITPD NQTIIHPPPE SISMIIANMG TLIQEIITTS
101: SSLMFSCQKI VLDSTSLSQN SSRYREPSQN DVGHGQGQGQ VDHLLQDYDW YVDNYNSNCN THEDNKNHVT SSSTIIASST ISHDNYYSKE FGKKELLLST
201: SKGKVVNEEN NYDIVELDAS DLLAKYTHYC QICGKGFKRD ANLRMHMRAH GDEYKSSAAL SNPMKRINDL TSDGSLKSSS NTIKYSCPQE GCRWNKKHAK
301: FQPLKSMVCV KNHYKRSHCP KMYVCKRCNK KSFSVLSDLR THEKHCGDLK WQCSCGTTFS RKDKLMGHVS LFVGHTPLIK QSAR

Best Arabidopsis Sequence Match ( AT5G22890.1 )
(BLAST)

001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK

Arabidopsis Description

STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.