Factsheet for Solyc01g087050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017556	Potato	nucleus	47.65	99.3
Solyc11g062060.1.1	Tomato	nucleus	54.7	62.45
VIT_13s0064g01060.t01	Wine grape	nucleus	61.74	53.64
KRH27491	Soybean	nucleus, plastid	63.09	53.41
Solyc04g074320.1.1	Tomato	nucleus	48.32	52.75
KRH20837	Soybean	nucleus, plastid	63.09	52.66
KRH43510	Soybean	nucleus, plastid	60.4	52.02
KRH13927	Soybean	nucleus, plastid	57.38	50.0
Solyc05g009770.1.1	Tomato	nucleus	46.98	48.95
TraesCS7A01G404400.1	Wheat	nucleus	59.06	47.83
TraesCS7D01G397800.1	Wheat	nucleus	59.06	47.57
GSMUA_Achr4P06350_001	Banana	nucleus	49.33	47.42
TraesCS7B01G304000.1	Wheat	nucleus	58.72	47.3
Zm00001d036812_P001	Maize	nucleus	61.41	47.04
GSMUA_Achr9P22340_001	Banana	nucleus	57.38	46.85
Zm00001d046774_P001	Maize	nucleus	61.41	45.98
EER88644	Sorghum	nucleus, plastid	60.74	44.8
Os06t0612300-01	Rice	endoplasmic reticulum, vacuole	60.74	40.67
Solyc03g059270.2.1	Tomato	nucleus	44.3	38.6
Solyc06g074360.2.1	Tomato	nucleus	24.5	34.6
Solyc11g066420.1.1	Tomato	nucleus, plastid	25.17	19.53
Solyc06g065440.1.1	Tomato	cytosol	21.81	18.52
Solyc04g056320.1.1	Tomato	nucleus	22.82	18.23
Solyc11g017140.1.1	Tomato	nucleus	24.16	14.85

Protein Annotations

EnsemblPlants:Solyc01g087050.2.1	EnsemblPlantsGene:Solyc01g087050.2	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF72	PFAM:PF00096
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI0002762F8E	UniProt:K4AY98
MapMan:15.5.15	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:81970114..81974295

Molecular Weight (calculated)

34039.9 Da

IEP (calculated)

8.093

GRAVY (calculated)

-0.824

Length

298 amino acids

Sequence
(BLAST)

001: MTEPYYNFFT GWFNFLPLHQ QYISSCYNKE IAPSSPPLRE ALPLLSNNNN KYSCESSSTT FSHEENTTTT NYYNENVSVS LHIGPPNSCE GVVDSGGNKE
101: EDQFDVVSND NNNTSSTTLN KGQYWIPTPS QILIGPTQFS CHLCYKTFNR YNNLQMHMWG HGSQYRKGPE SLRGTQPSAM LRLPCYCCAP GCKHNIDHPR
201: ARPLKDFRTL QTHYKRKHGA KPFMCRKCGK PFAVKGDWRT HEKNCGKIWY CICGSDFKHK RSLKDHIKSF GRGHGAVGVP NLEELEEESN SEIEQDLM

Best Arabidopsis Sequence Match ( AT3G57670.1 )
(BLAST)

001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK

Arabidopsis Description

WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.