Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400096573 | Potato | cytosol, mitochondrion, nucleus, peroxisome | 74.13 | 69.28 |
| Solyc01g087050.2.1 | Tomato | nucleus | 99.3 | 47.65 |
| PGSC0003DMT400077822 | Potato | nucleus | 79.72 | 35.85 |
| VIT_13s0064g01060.t01 | Wine grape | nucleus | 82.52 | 34.4 |
| KRH43510 | Soybean | nucleus, plastid | 83.22 | 34.39 |
| PGSC0003DMT400035408 | Potato | nucleus | 83.22 | 34.29 |
| KRH27491 | Soybean | nucleus, plastid | 83.22 | 33.81 |
| PGSC0003DMT400018308 | Potato | nucleus, plastid | 76.22 | 33.44 |
| KRH13927 | Soybean | nucleus, plastid | 79.72 | 33.33 |
| KRH20837 | Soybean | nucleus, plastid | 83.22 | 33.33 |
| GSMUA_Achr9P22340_001 | Banana | nucleus | 78.32 | 30.68 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 76.92 | 29.89 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 76.92 | 29.73 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 76.92 | 29.73 |
| Zm00001d036812_P001 | Maize | nucleus | 78.32 | 28.79 |
| Zm00001d046774_P001 | Maize | nucleus | 78.32 | 28.14 |
| EER88644 | Sorghum | nucleus, plastid | 78.32 | 27.72 |
| GSMUA_Achr4P06350_001 | Banana | nucleus | 57.34 | 26.45 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 78.32 | 25.17 |
| PGSC0003DMT400079144 | Potato | nucleus | 69.93 | 20.96 |
| PGSC0003DMT400001105 | Potato | nucleus | 33.57 | 15.09 |
| PGSC0003DMT400008898 | Potato | extracellular, nucleus | 34.27 | 13.32 |
| PGSC0003DMT400067092 | Potato | nucleus | 36.36 | 12.01 |
| PGSC0003DMT400023881 | Potato | nucleus | 37.06 | 10.33 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400017556 | EnsemblPlantsGene:PGSC0003DMG400006808 | Gene3D:3.30.160.60 | InterPro:Znf_C2H2_sf | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF72 |
| PGSC:PGSC0003DMG400006808 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000296C87E | UniProt:M1A931 | MapMan:15.5.15 |
Description
TRANSPARENT TESTA 1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006808]
Coordinates
chr1:+:65991133..65991564
Molecular Weight (calculated)
16452.9 Da
IEP (calculated)
9.580
GRAVY (calculated)
-0.900
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MHMWGHGSQY RKGPESLRGT QPSAMLRLPC YCCAPGCKHN IDHPRARPLK DFRTLQTHYK RKHGAKPFMC RKCGKPFAVK GDWRTHEKNC GKIWYCICGS
101: DFKHKRSLKD HIKSFGRGHG AVGVPNLEEL EEESTSEIEQ DLM
101: DFKHKRSLKD HIKSFGRGHG AVGVPNLEEL EEESTSEIEQ DLM
001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
Arabidopsis Description
WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.