CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003427.1-P	Field mustard	mitochondrion	100.0	100.0
CDY41142	Canola	mitochondrion	100.0	100.0
CDY48375	Canola	mitochondrion	100.0	100.0
CDX71784	Canola	cytosol, mitochondrion	99.34	99.34
CDX89075	Canola	cytosol, mitochondrion	99.34	99.34
CDX74731	Canola	mitochondrion	96.69	96.69
CDY37034	Canola	mitochondrion	96.69	96.69
CDY51811	Canola	mitochondrion	96.69	96.69
CDY57102	Canola	mitochondrion	96.69	96.69
AT3G60770.1	Thale cress	cytosol, mitochondrion	96.69	96.69
PGSC0003DMT400017986	Potato	mitochondrion	92.72	92.72
KRH04022	Soybean	nucleus	92.05	92.05
KRH57298	Soybean	mitochondrion	92.05	92.05
KRH57294	Soybean	mitochondrion	92.05	92.05
KRH57296	Soybean	mitochondrion	92.05	92.05
PGSC0003DMT400024801	Potato	mitochondrion	92.05	92.05
PGSC0003DMT400059239	Potato	mitochondrion	92.05	92.05
PGSC0003DMT400066770	Potato	mitochondrion	92.05	92.05
PGSC0003DMT400070434	Potato	mitochondrion	92.05	92.05
VIT_15s0048g00670.t01	Wine grape	mitochondrion	92.05	92.05
CDY56728	Canola	cytosol, mitochondrion	94.04	89.87
VIT_16s0022g01590.t01	Wine grape	mitochondrion	89.4	89.4
TraesCS7D01G313200.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7B01G217400.1	Wheat	golgi	86.75	86.75
TraesCS7B01G217300.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7A01G316200.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	86.75	86.75
Os08t0117300-01	Rice	nucleus	86.75	86.75
EES14427	Sorghum	mitochondrion	86.09	86.09
Zm00001d049666_P001	Maize	mitochondrion	86.09	86.09
Zm00001d035094_P001	Maize	mitochondrion	85.43	85.43
EES14430	Sorghum	mitochondrion	85.43	85.43
GSMUA_Achr6P01570_001	Banana	mitochondrion	81.46	80.92
Os08t0117200-00	Rice	nucleus	82.78	79.11
GSMUA_AchrUn_...	Banana	mitochondrion	78.81	78.81
KRH07853	Soybean	cytosol	34.44	77.61
HORVU7Hr1G075290.2	Barley	plastid	86.75	72.38
TraesCS2A01G184000.1	Wheat	cytosol	71.52	71.52
TraesCS2B01G223400.1	Wheat	cytosol	71.52	71.52
TraesCS2D01G203800.1	Wheat	cytosol	71.52	71.52
HORVU7Hr1G075250.1	Barley	plasma membrane	86.75	71.2
Os07t0572900-01	Rice	mitochondrion	68.87	68.87
EER97417	Sorghum	cytosol, mitochondrion	68.21	68.21
CDX74728	Canola	endoplasmic reticulum, extracellular	81.46	67.21
Zm00001d049668_P001	Maize	cytosol, mitochondrion	80.13	66.12
GSMUA_Achr1P16660_001	Banana	plastid	80.79	65.95
Os02t0677800-01	Rice	mitochondrion	31.79	43.64
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	35.1	40.15
HORVU2Hr1G037940.1	Barley	cytosol	30.46	21.8

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	MapMan:17.1.3.1.14	GO:A0A078IBX4	UniProt:A0A078IBX4	EnsemblPlants:CDX67841
ProteinID:CDX67841	ProteinID:CDX67841.1	ProteinID:CDY41142.1	ProteinID:CDY48375.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00099038001	HAMAP:MF_01343_A	PFAM:PF00312	PFAM:PF08069	ScanProsite:PS00362
PANTHER:PTHR11885	PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N	InterPro:Ribosomal_S15	InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd
SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060	UniParc:UPI00018C6883	:	:

Description

BnaA07g18810DBnaA07g18810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBX4]

Coordinates

chrLK031787:-:2510083..2511339

Molecular Weight (calculated)

17077.1 Da

IEP (calculated)

11.027

GRAVY (calculated)

-0.506

Length

151 amino acids

Sequence
(BLAST)

001: MGRLHSKGKG ISASALPYKR SPPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGNK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.