Factsheet for TraesCS7B01G217400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579
extracellular: 19786127
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	100.0	100.0
TraesCS7B01G217300.1	Wheat	cytosol, mitochondrion	100.0	100.0
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	100.0	100.0
Zm00001d049666_P001	Maize	mitochondrion	96.03	96.03
EES14427	Sorghum	mitochondrion	96.03	96.03
Os08t0117300-01	Rice	nucleus	95.36	95.36
Zm00001d035094_P001	Maize	mitochondrion	95.36	95.36
EES14430	Sorghum	mitochondrion	95.36	95.36
VIT_15s0048g00670.t01	Wine grape	mitochondrion	88.74	88.74
AT4G00100.1	Thale cress	cytosol, mitochondrion	88.08	88.08
AT3G60770.1	Thale cress	cytosol, mitochondrion	88.08	88.08
Os08t0117200-00	Rice	nucleus	92.05	87.97
Solyc05g051000.2.1	Tomato	nucleus	87.42	87.42
CDY51811	Canola	mitochondrion	87.42	87.42
Bra004901.1-P	Field mustard	mitochondrion	87.42	87.42
CDY57102	Canola	mitochondrion	87.42	87.42
Bra040316.1-P	Field mustard	mitochondrion	87.42	87.42
CDX74731	Canola	mitochondrion	87.42	87.42
CDY37034	Canola	mitochondrion	87.42	87.42
PGSC0003DMT400017986	Potato	mitochondrion	87.42	87.42
Solyc01g091220.2.1	Tomato	mitochondrion	86.75	86.75
KRH57294	Soybean	mitochondrion	86.75	86.75
PGSC0003DMT400024801	Potato	mitochondrion	86.75	86.75
PGSC0003DMT400059239	Potato	mitochondrion	86.75	86.75
PGSC0003DMT400066770	Potato	mitochondrion	86.75	86.75
PGSC0003DMT400070434	Potato	mitochondrion	86.75	86.75
Solyc11g072260.1.1	Tomato	nucleus	86.75	86.75
Solyc03g083530.2.1	Tomato	mitochondrion	86.75	86.75
Solyc10g018250.1.1	Tomato	mitochondrion	86.75	86.75
KRH57298	Soybean	mitochondrion	86.75	86.75
Bra003427.1-P	Field mustard	mitochondrion	86.75	86.75
Bra007556.1-P	Field mustard	mitochondrion	86.75	86.75
Bra014472.1-P	Field mustard	mitochondrion	86.75	86.75
CDX67841	Canola	extracellular	86.75	86.75
CDX89075	Canola	cytosol, mitochondrion	86.75	86.75
CDY41142	Canola	mitochondrion	86.75	86.75
CDY48375	Canola	mitochondrion	86.75	86.75
KRH04022	Soybean	nucleus	86.75	86.75
KRH57296	Soybean	mitochondrion	86.75	86.75
CDX71784	Canola	cytosol, mitochondrion	86.09	86.09
VIT_16s0022g01590.t01	Wine grape	mitochondrion	85.43	85.43
HORVU7Hr1G075290.2	Barley	plastid	100.0	83.43
GSMUA_AchrUn_...	Banana	mitochondrion	80.13	80.13
GSMUA_Achr6P01570_001	Banana	mitochondrion	80.13	79.61
CDY56728	Canola	cytosol, mitochondrion	80.79	77.22
TraesCS2B01G223400.1	Wheat	cytosol	76.82	76.82
Zm00001d049668_P001	Maize	cytosol, mitochondrion	90.07	74.32
KRH07853	Soybean	cytosol	32.45	73.13
GSMUA_Achr1P16660_001	Banana	plastid	82.12	67.03
CDX74728	Canola	endoplasmic reticulum, extracellular	72.85	60.11
Os02t0677800-01	Rice	mitochondrion	35.76	49.09
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	35.1	40.15

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	MapMan:17.1.3.1.14	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	HAMAP:MF_01343_A
PFAM:PF00312	PFAM:PF08069	ScanProsite:PS00362	PANTHER:PTHR11885	PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N
InterPro:Ribosomal_S15	InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd	SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060
EnsemblPlantsGene:TraesCS7B01G217400	EnsemblPlants:TraesCS7B01G217400.1	TIGR:cd00353	:	:	:

Description

No Description!

Coordinates

chr7B:+:400925214..400927297

Molecular Weight (calculated)

17096.2 Da

IEP (calculated)

11.215

GRAVY (calculated)

-0.433

Length

151 amino acids

Sequence
(BLAST)

001: MGRMHSRGKG ISSSALPYKR TPPSWVKTAV ADVDELITKA AKKGQMPSQI GVLLRDQHGI PLVKSVTGSK ILRILKAHGL APEIPEDLYF LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK RTKKLPPTWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.