Factsheet for Bra004901.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040316.1-P	Field mustard	mitochondrion	100.0	100.0
CDX74731	Canola	mitochondrion	100.0	100.0
CDY51811	Canola	mitochondrion	100.0	100.0
Bra003427.1-P	Field mustard	mitochondrion	96.69	96.69
Bra007556.1-P	Field mustard	mitochondrion	96.69	96.69
Bra014472.1-P	Field mustard	mitochondrion	96.69	96.69
AT4G00100.1	Thale cress	cytosol, mitochondrion	96.69	96.69
PGSC0003DMT400017986	Potato	mitochondrion	94.04	94.04
PGSC0003DMT400070434	Potato	mitochondrion	93.38	93.38
PGSC0003DMT400066770	Potato	mitochondrion	93.38	93.38
PGSC0003DMT400059239	Potato	mitochondrion	93.38	93.38
PGSC0003DMT400024801	Potato	mitochondrion	93.38	93.38
KRH57296	Soybean	mitochondrion	91.39	91.39
VIT_15s0048g00670.t01	Wine grape	mitochondrion	91.39	91.39
KRH57298	Soybean	mitochondrion	91.39	91.39
KRH57294	Soybean	mitochondrion	91.39	91.39
KRH04022	Soybean	nucleus	91.39	91.39
VIT_16s0022g01590.t01	Wine grape	mitochondrion	90.07	90.07
Zm00001d049666_P001	Maize	mitochondrion	88.74	88.74
EES14427	Sorghum	mitochondrion	88.74	88.74
Os08t0117300-01	Rice	nucleus	88.08	88.08
EES14430	Sorghum	mitochondrion	88.08	88.08
TraesCS7D01G313200.1	Wheat	cytosol, mitochondrion	87.42	87.42
TraesCS7B01G217400.1	Wheat	golgi	87.42	87.42
TraesCS7B01G217300.1	Wheat	cytosol, mitochondrion	87.42	87.42
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	87.42	87.42
TraesCS7A01G316200.1	Wheat	cytosol, mitochondrion	87.42	87.42
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	87.42	87.42
Zm00001d035094_P001	Maize	mitochondrion	86.75	86.75
GSMUA_Achr6P01570_001	Banana	mitochondrion	82.78	82.24
GSMUA_AchrUn_...	Banana	mitochondrion	80.13	80.13
Os08t0117200-00	Rice	nucleus	82.78	79.11
KRH07853	Soybean	cytosol	34.44	77.61
TraesCS2B01G223400.1	Wheat	cytosol	73.51	73.51
HORVU7Hr1G075290.2	Barley	plastid	87.42	72.93
TraesCS2A01G184000.1	Wheat	cytosol	72.85	72.85
TraesCS2D01G203800.1	Wheat	cytosol	72.85	72.85
HORVU7Hr1G075250.1	Barley	plasma membrane	87.42	71.74
Os07t0572900-01	Rice	mitochondrion	70.2	70.2
EER97417	Sorghum	cytosol, mitochondrion	69.54	69.54
Zm00001d049668_P001	Maize	cytosol, mitochondrion	82.78	68.31
GSMUA_Achr1P16660_001	Banana	plastid	82.12	67.03
Os02t0677800-01	Rice	mitochondrion	31.13	42.73
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	33.77	38.64
HORVU2Hr1G037940.1	Barley	cytosol	31.79	22.75

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	MapMan:17.1.3.1.14	EnsemblPlantsGene:Bra004901	EnsemblPlants:Bra004901.1	EnsemblPlants:Bra004901.1-P
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	UniProt:M4CL15	HAMAP:MF_01343_A	PFAM:PF00312
PFAM:PF08069	ScanProsite:PS00362	PANTHER:PTHR11885	PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N	InterPro:Ribosomal_S15
InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd	SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060	UniParc:UPI00018C6881

Description

AT4G00100 (E=3e-080) ATRPS13A, RPS13, PFL2 | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A); structural constituent of ribosome

Coordinates

chrA05:-:2393606..2394782

Molecular Weight (calculated)

17106.2 Da

IEP (calculated)

11.074

GRAVY (calculated)

-0.456

Length

151 amino acids

Sequence
(BLAST)

001: MGRMHSRGKG ISASALPYKR SPPTWLKTTA LDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGNK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.