Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G203800.1 | Wheat | cytosol | 32.23 | 45.03 |
| TraesCS2B01G223400.1 | Wheat | cytosol | 31.75 | 44.37 |
| TraesCS2A01G184000.1 | Wheat | cytosol | 31.75 | 44.37 |
| Os07t0572900-01 | Rice | mitochondrion | 26.54 | 37.09 |
| EER97417 | Sorghum | cytosol, mitochondrion | 25.59 | 35.76 |
| CDY37034 | Canola | mitochondrion | 22.75 | 31.79 |
| PGSC0003DMT400017986 | Potato | mitochondrion | 22.75 | 31.79 |
| CDY57102 | Canola | mitochondrion | 22.75 | 31.79 |
| CDY51811 | Canola | mitochondrion | 22.75 | 31.79 |
| Solyc05g051000.2.1 | Tomato | nucleus | 22.75 | 31.79 |
| CDX74731 | Canola | mitochondrion | 22.75 | 31.79 |
| Bra040316.1-P | Field mustard | mitochondrion | 22.75 | 31.79 |
| Bra004901.1-P | Field mustard | mitochondrion | 22.75 | 31.79 |
| Solyc10g018250.1.1 | Tomato | mitochondrion | 22.27 | 31.13 |
| AT4G00100.1 | Thale cress | cytosol, mitochondrion | 22.27 | 31.13 |
| Solyc03g083530.2.1 | Tomato | mitochondrion | 22.27 | 31.13 |
| Solyc01g091220.2.1 | Tomato | mitochondrion | 22.27 | 31.13 |
| Solyc11g072260.1.1 | Tomato | nucleus | 22.27 | 31.13 |
| PGSC0003DMT400070434 | Potato | mitochondrion | 22.27 | 31.13 |
| PGSC0003DMT400066770 | Potato | mitochondrion | 22.27 | 31.13 |
| PGSC0003DMT400059239 | Potato | mitochondrion | 22.27 | 31.13 |
| PGSC0003DMT400024801 | Potato | mitochondrion | 22.27 | 31.13 |
| VIT_15s0048g00670.t01 | Wine grape | mitochondrion | 22.27 | 31.13 |
| VIT_16s0022g01590.t01 | Wine grape | mitochondrion | 22.27 | 31.13 |
| AT3G60770.1 | Thale cress | cytosol, mitochondrion | 22.27 | 31.13 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 22.27 | 31.13 |
| CDY48375 | Canola | mitochondrion | 21.8 | 30.46 |
| Bra003427.1-P | Field mustard | mitochondrion | 21.8 | 30.46 |
| Bra007556.1-P | Field mustard | mitochondrion | 21.8 | 30.46 |
| Bra014472.1-P | Field mustard | mitochondrion | 21.8 | 30.46 |
| CDX67841 | Canola | extracellular | 21.8 | 30.46 |
| CDX71784 | Canola | cytosol, mitochondrion | 21.8 | 30.46 |
| CDX89075 | Canola | cytosol, mitochondrion | 21.8 | 30.46 |
| CDY41142 | Canola | mitochondrion | 21.8 | 30.46 |
| KRH04022 | Soybean | nucleus | 21.8 | 30.46 |
| KRH57298 | Soybean | mitochondrion | 21.8 | 30.46 |
| KRH57296 | Soybean | mitochondrion | 21.8 | 30.46 |
| KRH57294 | Soybean | mitochondrion | 21.8 | 30.46 |
| HORVU7Hr1G075290.2 | Barley | plastid | 25.59 | 29.83 |
| GSMUA_Achr6P01570_001 | Banana | mitochondrion | 21.33 | 29.61 |
| HORVU7Hr1G075250.1 | Barley | plasma membrane | 25.59 | 29.35 |
| CDY56728 | Canola | cytosol, mitochondrion | 21.8 | 29.11 |
| GSMUA_Achr1P16660_001 | Banana | plastid | 24.17 | 27.57 |
| CDX74728 | Canola | endoplasmic reticulum, extracellular | 13.74 | 15.85 |
| KRH07853 | Soybean | cytosol | 2.37 | 7.46 |
| Solyc12g077580.1.1 | Tomato | endoplasmic reticulum, extracellular | 3.32 | 5.3 |
Protein Annotations
| Gene3D:1.10.8.1030 | MapMan:35.1 | UniProt:A0A287HQU8 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU2Hr1G037940 |
| EnsemblPlants:HORVU2Hr1G037940.1 | PFAM:PF08069 | PANTHER:PTHR11885 | PANTHER:PTHR11885:SF8 | InterPro:Ribosomal_S13/S15_N | InterPro:Ribosomal_S15P |
| SMART:SM01386 | UniParc:UPI000B46B8CD | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:175052889..175054323
Molecular Weight (calculated)
21520.9 Da
IEP (calculated)
11.706
GRAVY (calculated)
-0.403
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRMHSNGKG MSSSVIPYKR EAPAWVKTAA PDVEEMIVRA AKKGQLPSQI GALLRDGHGI PLSKACLLYT SLXXXXXXXX XXAPRSCACS RRAGSRRRCP
101: RTSTSSSRRP LRSGSTWRGT GRTSTPSSAS SSSRAGSTAS PATTASPRRC PPPGSTSPPP RAPSSPDSVK LRFFDVILCS FGLRFCVKYC SKQCFWQCKL
201: LNLSITSRVP G
101: RTSTSSSRRP LRSGSTWRGT GRTSTPSSAS SSSRAGSTAS PATTASPRRC PPPGSTSPPP RAPSSPDSVK LRFFDVILCS FGLRFCVKYC SKQCFWQCKL
201: LNLSITSRVP G
001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
Arabidopsis Description
RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.