Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G316200.1 | Wheat | cytosol, mitochondrion | 82.07 | 100.0 |
| TraesCS7B01G217300.1 | Wheat | cytosol, mitochondrion | 82.07 | 100.0 |
| TraesCS7D01G313200.1 | Wheat | cytosol, mitochondrion | 82.07 | 100.0 |
| VIT_15s0048g00670.t01 | Wine grape | mitochondrion | 72.83 | 88.74 |
| AT4G00100.1 | Thale cress | cytosol, mitochondrion | 72.28 | 88.08 |
| AT3G60770.1 | Thale cress | cytosol, mitochondrion | 72.28 | 88.08 |
| CDY57102 | Canola | mitochondrion | 71.74 | 87.42 |
| PGSC0003DMT400017986 | Potato | mitochondrion | 71.74 | 87.42 |
| Solyc05g051000.2.1 | Tomato | nucleus | 71.74 | 87.42 |
| CDY51811 | Canola | mitochondrion | 71.74 | 87.42 |
| CDY37034 | Canola | mitochondrion | 71.74 | 87.42 |
| CDX74731 | Canola | mitochondrion | 71.74 | 87.42 |
| Bra040316.1-P | Field mustard | mitochondrion | 71.74 | 87.42 |
| Bra004901.1-P | Field mustard | mitochondrion | 71.74 | 87.42 |
| Solyc03g083530.2.1 | Tomato | mitochondrion | 71.2 | 86.75 |
| CDX89075 | Canola | cytosol, mitochondrion | 71.2 | 86.75 |
| Solyc01g091220.2.1 | Tomato | mitochondrion | 71.2 | 86.75 |
| PGSC0003DMT400070434 | Potato | mitochondrion | 71.2 | 86.75 |
| PGSC0003DMT400066770 | Potato | mitochondrion | 71.2 | 86.75 |
| PGSC0003DMT400059239 | Potato | mitochondrion | 71.2 | 86.75 |
| PGSC0003DMT400024801 | Potato | mitochondrion | 71.2 | 86.75 |
| Bra003427.1-P | Field mustard | mitochondrion | 71.2 | 86.75 |
| KRH57298 | Soybean | mitochondrion | 71.2 | 86.75 |
| KRH57296 | Soybean | mitochondrion | 71.2 | 86.75 |
| KRH57294 | Soybean | mitochondrion | 71.2 | 86.75 |
| KRH04022 | Soybean | nucleus | 71.2 | 86.75 |
| Solyc10g018250.1.1 | Tomato | mitochondrion | 71.2 | 86.75 |
| Solyc11g072260.1.1 | Tomato | nucleus | 71.2 | 86.75 |
| Bra007556.1-P | Field mustard | mitochondrion | 71.2 | 86.75 |
| Bra014472.1-P | Field mustard | mitochondrion | 71.2 | 86.75 |
| CDX67841 | Canola | extracellular | 71.2 | 86.75 |
| CDY48375 | Canola | mitochondrion | 71.2 | 86.75 |
| CDY41142 | Canola | mitochondrion | 71.2 | 86.75 |
| CDX71784 | Canola | cytosol, mitochondrion | 70.65 | 86.09 |
| VIT_16s0022g01590.t01 | Wine grape | mitochondrion | 70.11 | 85.43 |
| HORVU7Hr1G075290.2 | Barley | plastid | 83.15 | 84.53 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 65.76 | 80.13 |
| GSMUA_Achr6P01570_001 | Banana | mitochondrion | 65.76 | 79.61 |
| CDY56728 | Canola | cytosol, mitochondrion | 66.3 | 77.22 |
| KRH07853 | Soybean | cytosol | 26.63 | 73.13 |
| GSMUA_Achr1P16660_001 | Banana | plastid | 70.11 | 69.73 |
| CDX74728 | Canola | endoplasmic reticulum, extracellular | 60.33 | 60.66 |
| Solyc12g077580.1.1 | Tomato | endoplasmic reticulum, extracellular | 28.8 | 40.15 |
| HORVU2Hr1G037940.1 | Barley | cytosol | 29.35 | 25.59 |
Protein Annotations
| Gene3D:1.10.287.10 | Gene3D:1.10.8.1030 | MapMan:17.1.3.1.14 | UniProt:A0A287WXI0 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0030529 | EnsemblPlantsGene:HORVU7Hr1G075250 | EnsemblPlants:HORVU7Hr1G075250.1 | HAMAP:MF_01343_A | PFAM:PF00312 | PFAM:PF08069 |
| ScanProsite:PS00362 | PANTHER:PTHR11885 | PANTHER:PTHR11885:SF7 | InterPro:Ribosomal_S13/S15_N | InterPro:Ribosomal_S15 | InterPro:Ribosomal_S15P |
| InterPro:S15_NS1_RNA-bd | SMART:SM01386 | SMART:SM01387 | SUPFAM:SSF47060 | UniParc:UPI000B46D40E | SEG:seg |
Description
No Description!
Coordinates
chrchr7H:+:435469556..435471602
Molecular Weight (calculated)
20728.5 Da
IEP (calculated)
11.190
GRAVY (calculated)
-0.621
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: QSRRRSCPSS PSRRCCCRQP PPPSPELNPS PDAMGRMHSR GKGISSSALP YKRTPPSWVK TAVADVDELI TKAAKKGQMP SQIGVLLRDQ HGIPLVKSVT
101: GSKILRILKA HGLAPEIPED LYFLIKKAVA IRKHLERNRK DKDSKFRLIL VESRIHRLAR YYKRTKKLPP TWKYESTTAS TLVA
101: GSKILRILKA HGLAPEIPED LYFLIKKAVA IRKHLERNRK DKDSKFRLIL VESRIHRLAR YYKRTKKLPP TWKYESTTAS TLVA
001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
Arabidopsis Description
RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.