Factsheet for GSMUA_Achr1P16660_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	72.43	88.74
VIT_15s0048g00670.t01	Wine grape	mitochondrion	71.35	87.42
PGSC0003DMT400024801	Potato	mitochondrion	70.81	86.75
PGSC0003DMT400059239	Potato	mitochondrion	70.81	86.75
Solyc11g072260.1.1	Tomato	nucleus	70.81	86.75
Solyc10g018250.1.1	Tomato	mitochondrion	70.81	86.75
PGSC0003DMT400066770	Potato	mitochondrion	70.81	86.75
Solyc03g083530.2.1	Tomato	mitochondrion	70.81	86.75
Solyc01g091220.2.1	Tomato	mitochondrion	70.81	86.75
PGSC0003DMT400070434	Potato	mitochondrion	70.81	86.75
GSMUA_Achr6P01570_001	Banana	mitochondrion	70.81	86.18
KRH57294	Soybean	mitochondrion	70.27	86.09
KRH04022	Soybean	nucleus	70.27	86.09
KRH57296	Soybean	mitochondrion	70.27	86.09
KRH57298	Soybean	mitochondrion	70.27	86.09
PGSC0003DMT400017986	Potato	mitochondrion	70.27	86.09
Solyc05g051000.2.1	Tomato	nucleus	70.27	86.09
VIT_16s0022g01590.t01	Wine grape	mitochondrion	69.19	84.77
Os08t0117300-01	Rice	nucleus	68.11	83.44
EES14427	Sorghum	mitochondrion	67.57	82.78
Zm00001d049666_P001	Maize	mitochondrion	67.57	82.78
TraesCS7A01G316200.1	Wheat	cytosol, mitochondrion	67.03	82.12
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	67.03	82.12
TraesCS7B01G217300.1	Wheat	cytosol, mitochondrion	67.03	82.12
TraesCS7B01G217400.1	Wheat	golgi	67.03	82.12
TraesCS7D01G313200.1	Wheat	cytosol, mitochondrion	67.03	82.12
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	67.03	82.12
AT4G00100.1	Thale cress	cytosol, mitochondrion	67.03	82.12
AT3G60770.1	Thale cress	cytosol, mitochondrion	67.03	82.12
CDX74731	Canola	mitochondrion	67.03	82.12
CDY37034	Canola	mitochondrion	67.03	82.12
CDY51811	Canola	mitochondrion	67.03	82.12
Bra040316.1-P	Field mustard	mitochondrion	67.03	82.12
CDY57102	Canola	mitochondrion	67.03	82.12
EES14430	Sorghum	mitochondrion	67.03	82.12
Bra004901.1-P	Field mustard	mitochondrion	67.03	82.12
Zm00001d035094_P001	Maize	mitochondrion	66.49	81.46
Bra007556.1-P	Field mustard	mitochondrion	65.95	80.79
Bra014472.1-P	Field mustard	mitochondrion	65.95	80.79
CDX67841	Canola	extracellular	65.95	80.79
Bra003427.1-P	Field mustard	mitochondrion	65.95	80.79
CDY48375	Canola	mitochondrion	65.95	80.79
CDY41142	Canola	mitochondrion	65.95	80.79
CDX89075	Canola	cytosol, mitochondrion	65.95	80.79
CDX71784	Canola	cytosol, mitochondrion	65.41	80.13
CDY56728	Canola	cytosol, mitochondrion	64.86	75.95
Os08t0117200-00	Rice	nucleus	64.32	75.32
HORVU7Hr1G075290.2	Barley	plastid	70.27	71.82
KRH07853	Soybean	cytosol	25.41	70.15
HORVU7Hr1G075250.1	Barley	plasma membrane	69.73	70.11
TraesCS2D01G203800.1	Wheat	cytosol	55.14	67.55
TraesCS2B01G223400.1	Wheat	cytosol	55.14	67.55
TraesCS2A01G184000.1	Wheat	cytosol	55.14	67.55
Zm00001d049668_P001	Maize	cytosol, mitochondrion	65.41	66.12
Os07t0572900-01	Rice	mitochondrion	53.51	65.56
EER97417	Sorghum	cytosol, mitochondrion	52.97	64.9
CDX74728	Canola	endoplasmic reticulum, extracellular	54.59	55.19
Os02t0677800-01	Rice	mitochondrion	27.57	46.36
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	28.11	39.39
HORVU2Hr1G037940.1	Barley	cytosol	27.57	24.17

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	MapMan:17.1.3.1.14	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr1G16660_001	EnsemblPlants:GSMUA_Achr1P16660_001	EnsemblPlants:GSMUA_Achr1T16660_001	UniProt:M0S0H4	HAMAP:MF_01343_A	PFAM:PF00312
PFAM:PF08069	ScanProsite:PS00362	PANTHER:PTHR11885	PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N	InterPro:Ribosomal_S15
InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd	SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060	UniParc:UPI0002956097

Description

40S ribosomal protein S13 [Source:GMGC_GENE;Acc:GSMUA_Achr1G16660_001]

Coordinates

chr1:-:12401932..12405420

Molecular Weight (calculated)

20479.2 Da

IEP (calculated)

11.095

GRAVY (calculated)

-0.314

Length

185 amino acids

Sequence
(BLAST)

001: MQTKSPANAS NRGLGFSLFP PTKETPVAAC AVVAMGRMHS RGKGISSSAL PYKRTPPSWL KISAADVEEN ICKFAKKGLS PSQIGVILRD SHGIALVKSV
101: TGSKILRILK AHGLQPGLPE DLYHLIKKAV AIRKHLERSR KDKDSKFRLI LVESRIHRLA RYYKRTKKVE STWKYDASIA STMVS

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.