Factsheet for Os08t0117300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049666_P001	Maize	mitochondrion	98.01	98.01
EES14427	Sorghum	mitochondrion	98.01	98.01
EES14430	Sorghum	mitochondrion	96.69	96.69
Zm00001d035094_P001	Maize	mitochondrion	96.03	96.03
TraesCS7B01G217400.1	Wheat	golgi	95.36	95.36
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	95.36	95.36
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	95.36	95.36
VIT_15s0048g00670.t01	Wine grape	mitochondrion	90.07	90.07
Os08t0117200-00	Rice	nucleus	94.04	89.87
Solyc05g051000.2.1	Tomato	nucleus	89.4	89.4
PGSC0003DMT400017986	Potato	mitochondrion	89.4	89.4
PGSC0003DMT400024801	Potato	mitochondrion	88.74	88.74
PGSC0003DMT400059239	Potato	mitochondrion	88.74	88.74
PGSC0003DMT400066770	Potato	mitochondrion	88.74	88.74
PGSC0003DMT400070434	Potato	mitochondrion	88.74	88.74
Solyc01g091220.2.1	Tomato	mitochondrion	88.74	88.74
Solyc03g083530.2.1	Tomato	mitochondrion	88.74	88.74
Solyc10g018250.1.1	Tomato	mitochondrion	88.74	88.74
Solyc11g072260.1.1	Tomato	nucleus	88.74	88.74
AT4G00100.1	Thale cress	cytosol, mitochondrion	88.08	88.08
KRH57298	Soybean	mitochondrion	88.08	88.08
KRH57296	Soybean	mitochondrion	88.08	88.08
KRH57294	Soybean	mitochondrion	88.08	88.08
KRH04022	Soybean	nucleus	88.08	88.08
Bra004901.1-P	Field mustard	mitochondrion	88.08	88.08
CDY57102	Canola	mitochondrion	88.08	88.08
Bra040316.1-P	Field mustard	mitochondrion	88.08	88.08
CDY51811	Canola	mitochondrion	88.08	88.08
AT3G60770.1	Thale cress	cytosol, mitochondrion	88.08	88.08
CDX74731	Canola	mitochondrion	88.08	88.08
CDY37034	Canola	mitochondrion	88.08	88.08
CDY41142	Canola	mitochondrion	86.75	86.75
Bra014472.1-P	Field mustard	mitochondrion	86.75	86.75
CDX67841	Canola	extracellular	86.75	86.75
CDX89075	Canola	cytosol, mitochondrion	86.75	86.75
CDY48375	Canola	mitochondrion	86.75	86.75
VIT_16s0022g01590.t01	Wine grape	mitochondrion	86.75	86.75
Bra007556.1-P	Field mustard	mitochondrion	86.75	86.75
Bra003427.1-P	Field mustard	mitochondrion	86.75	86.75
CDX71784	Canola	cytosol, mitochondrion	86.09	86.09
GSMUA_AchrUn_...	Banana	mitochondrion	82.12	82.12
GSMUA_Achr6P01570_001	Banana	mitochondrion	81.46	80.92
HORVU7Hr1G075290.2	Barley	plastid	95.36	79.56
CDY56728	Canola	cytosol, mitochondrion	80.79	77.22
Zm00001d049668_P001	Maize	cytosol, mitochondrion	92.05	75.96
Os07t0572900-01	Rice	mitochondrion	73.51	73.51
KRH07853	Soybean	cytosol	32.45	73.13
GSMUA_Achr1P16660_001	Banana	plastid	83.44	68.11
CDX74728	Canola	endoplasmic reticulum, extracellular	72.19	59.56
Os02t0677800-01	Rice	mitochondrion	40.4	55.45
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	34.44	39.39

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	MapMan:17.1.3.1.14	PDB:1YSH	EntrezGene:4344524	EMBL:AK058822
EMBL:AK104147	ProteinID:BAD33099.1	ProteinID:BAF22775.1	ProteinID:BAT03564.1	ProteinID:EEE67943.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0022627	GO:GO:0070181	HAMAP:MF_01343_A
EnsemblPlantsGene:Os08g0117300	EnsemblPlants:Os08t0117300-01	PFAM:PF00312	PFAM:PF08069	ScanProsite:PS00362	PANTHER:PTHR11885
PANTHER:PTHR11885:SF7	UniProt:Q69UI1	InterPro:Ribosomal_S13/S15_N	InterPro:Ribosomal_S15	InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd
SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060	UniParc:UPI000023AE25	RefSeq:XP_015649875.1	:

Description

Similar to 40S ribosomal protein S13. (Os08t0117300-01)

Coordinates

chr8:-:962587..964531

Molecular Weight (calculated)

17146.3 Da

IEP (calculated)

11.215

GRAVY (calculated)

-0.462

Length

151 amino acids

Sequence
(BLAST)

001: MGRMHSRGKG ISSSALPYKR TPPSWLKTAA SDVEEMIMKA AKKGQMPSQI GVVLRDQHGI PLVKSVTGSK ILRILKAHGL APEIPEDLYF LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK RTKKLPPTWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.