Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049666_P001 | Maize | mitochondrion | 77.6 | 94.04 |
| EES14427 | Sorghum | mitochondrion | 77.6 | 94.04 |
| Os08t0117300-01 | Rice | nucleus | 75.96 | 92.05 |
| Zm00001d035094_P001 | Maize | mitochondrion | 75.41 | 91.39 |
| TraesCS7B01G217400.1 | Wheat | golgi | 74.32 | 90.07 |
| TraesCS7A01G316800.1 | Wheat | cytosol, mitochondrion | 74.32 | 90.07 |
| TraesCS7D01G313300.1 | Wheat | cytosol, mitochondrion | 74.32 | 90.07 |
| VIT_15s0048g00670.t01 | Wine grape | mitochondrion | 68.85 | 83.44 |
| Bra040316.1-P | Field mustard | mitochondrion | 68.31 | 82.78 |
| CDX74731 | Canola | mitochondrion | 68.31 | 82.78 |
| PGSC0003DMT400017986 | Potato | mitochondrion | 68.31 | 82.78 |
| CDY37034 | Canola | mitochondrion | 68.31 | 82.78 |
| Bra004901.1-P | Field mustard | mitochondrion | 68.31 | 82.78 |
| Solyc05g051000.2.1 | Tomato | nucleus | 68.31 | 82.78 |
| CDY51811 | Canola | mitochondrion | 68.31 | 82.78 |
| CDY57102 | Canola | mitochondrion | 68.31 | 82.78 |
| Os08t0117200-00 | Rice | nucleus | 71.04 | 82.28 |
| Solyc03g083530.2.1 | Tomato | mitochondrion | 67.76 | 82.12 |
| Solyc10g018250.1.1 | Tomato | mitochondrion | 67.76 | 82.12 |
| Solyc01g091220.2.1 | Tomato | mitochondrion | 67.76 | 82.12 |
| PGSC0003DMT400070434 | Potato | mitochondrion | 67.76 | 82.12 |
| PGSC0003DMT400066770 | Potato | mitochondrion | 67.76 | 82.12 |
| PGSC0003DMT400059239 | Potato | mitochondrion | 67.76 | 82.12 |
| PGSC0003DMT400024801 | Potato | mitochondrion | 67.76 | 82.12 |
| Solyc11g072260.1.1 | Tomato | nucleus | 67.76 | 82.12 |
| VIT_16s0022g01590.t01 | Wine grape | mitochondrion | 67.21 | 81.46 |
| AT4G00100.1 | Thale cress | cytosol, mitochondrion | 67.21 | 81.46 |
| AT3G60770.1 | Thale cress | cytosol, mitochondrion | 67.21 | 81.46 |
| KRH57296 | Soybean | mitochondrion | 67.21 | 81.46 |
| KRH57294 | Soybean | mitochondrion | 67.21 | 81.46 |
| KRH04022 | Soybean | nucleus | 67.21 | 81.46 |
| KRH57298 | Soybean | mitochondrion | 67.21 | 81.46 |
| CDY48375 | Canola | mitochondrion | 66.12 | 80.13 |
| Bra003427.1-P | Field mustard | mitochondrion | 66.12 | 80.13 |
| Bra007556.1-P | Field mustard | mitochondrion | 66.12 | 80.13 |
| Bra014472.1-P | Field mustard | mitochondrion | 66.12 | 80.13 |
| CDX67841 | Canola | extracellular | 66.12 | 80.13 |
| CDX89075 | Canola | cytosol, mitochondrion | 66.12 | 80.13 |
| CDY41142 | Canola | mitochondrion | 66.12 | 80.13 |
| CDX71784 | Canola | cytosol, mitochondrion | 65.57 | 79.47 |
| GSMUA_Achr6P01570_001 | Banana | mitochondrion | 63.93 | 76.97 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 63.39 | 76.82 |
| CDY56728 | Canola | cytosol, mitochondrion | 66.12 | 76.58 |
| HORVU7Hr1G075290.2 | Barley | plastid | 74.32 | 75.14 |
| KRH07853 | Soybean | cytosol | 26.78 | 73.13 |
| GSMUA_Achr1P16660_001 | Banana | plastid | 66.12 | 65.41 |
| CDX74728 | Canola | endoplasmic reticulum, extracellular | 54.64 | 54.64 |
| Os02t0677800-01 | Rice | mitochondrion | 31.69 | 52.73 |
| Solyc12g077580.1.1 | Tomato | endoplasmic reticulum, extracellular | 26.78 | 37.12 |
Protein Annotations
| Gene3D:1.10.287.10 | Gene3D:1.10.8.1030 | MapMan:17.1.3.1.14 | UniProt:A0A1D6PWX7 | ProteinID:AQK51037.1 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030529 | HAMAP:MF_01343_A | PFAM:PF00312 | PFAM:PF08069 | ScanProsite:PS00362 |
| PANTHER:PTHR11885 | PANTHER:PTHR11885:SF7 | InterPro:Ribosomal_S13/S15_N | InterPro:Ribosomal_S15 | InterPro:Ribosomal_S15P | InterPro:S15_NS1_RNA-bd |
| SMART:SM01386 | SMART:SM01387 | SUPFAM:SSF47060 | UniParc:UPI00084449D3 | EnsemblPlantsGene:Zm00001d049668 | EnsemblPlants:Zm00001d049668_P001 |
| EnsemblPlants:Zm00001d049668_T001 | : | : | : | : | : |
Description
40S ribosomal protein S13-1
Coordinates
chr4:+:39422305..39424601
Molecular Weight (calculated)
21142.3 Da
IEP (calculated)
11.189
GRAVY (calculated)
-0.508
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRMHSRGKG ISSSALPYKR TPPTWLKTAA SDVEEMITKA AKKGQMPSQI GVLLRDQHGI PLVKSVTGSK ILRILKAHGL APEIPEDLYF LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK RTKKLPPTWK YMTTERVNHC KHSGGLSEEL SVRRLKPRAL LEIIFMYRFK SLE
101: HLERNRKDKD SKFRLILVES RIHRLARYYK RTKKLPPTWK YMTTERVNHC KHSGGLSEEL SVRRLKPRAL LEIIFMYRFK SLE
001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
Arabidopsis Description
RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.