Factsheet for Zm00001d035094_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14430	Sorghum	mitochondrion	98.68	98.68
Zm00001d049666_P001	Maize	mitochondrion	97.35	97.35
Os08t0117300-01	Rice	nucleus	96.03	96.03
TraesCS7B01G217400.1	Wheat	golgi	95.36	95.36
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	95.36	95.36
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	95.36	95.36
VIT_15s0048g00670.t01	Wine grape	mitochondrion	88.74	88.74
Solyc05g051000.2.1	Tomato	nucleus	87.42	87.42
PGSC0003DMT400017986	Potato	mitochondrion	87.42	87.42
KRH04022	Soybean	nucleus	86.75	86.75
AT4G00100.1	Thale cress	cytosol, mitochondrion	86.75	86.75
KRH57294	Soybean	mitochondrion	86.75	86.75
KRH57296	Soybean	mitochondrion	86.75	86.75
KRH57298	Soybean	mitochondrion	86.75	86.75
PGSC0003DMT400024801	Potato	mitochondrion	86.75	86.75
PGSC0003DMT400059239	Potato	mitochondrion	86.75	86.75
PGSC0003DMT400066770	Potato	mitochondrion	86.75	86.75
PGSC0003DMT400070434	Potato	mitochondrion	86.75	86.75
Solyc01g091220.2.1	Tomato	mitochondrion	86.75	86.75
Solyc03g083530.2.1	Tomato	mitochondrion	86.75	86.75
Solyc10g018250.1.1	Tomato	mitochondrion	86.75	86.75
Solyc11g072260.1.1	Tomato	nucleus	86.75	86.75
CDY37034	Canola	mitochondrion	86.75	86.75
Bra004901.1-P	Field mustard	mitochondrion	86.75	86.75
Bra040316.1-P	Field mustard	mitochondrion	86.75	86.75
AT3G60770.1	Thale cress	cytosol, mitochondrion	86.75	86.75
CDX74731	Canola	mitochondrion	86.75	86.75
CDY51811	Canola	mitochondrion	86.75	86.75
CDY57102	Canola	mitochondrion	86.75	86.75
Os08t0117200-00	Rice	nucleus	90.73	86.71
VIT_16s0022g01590.t01	Wine grape	mitochondrion	86.09	86.09
Bra003427.1-P	Field mustard	mitochondrion	85.43	85.43
CDY48375	Canola	mitochondrion	85.43	85.43
CDY41142	Canola	mitochondrion	85.43	85.43
CDX89075	Canola	cytosol, mitochondrion	85.43	85.43
CDX67841	Canola	extracellular	85.43	85.43
Bra014472.1-P	Field mustard	mitochondrion	85.43	85.43
Bra007556.1-P	Field mustard	mitochondrion	85.43	85.43
CDX71784	Canola	cytosol, mitochondrion	84.77	84.77
GSMUA_Achr6P01570_001	Banana	mitochondrion	80.79	80.26
HORVU7Hr1G075290.2	Barley	plastid	95.36	79.56
GSMUA_AchrUn_...	Banana	mitochondrion	79.47	79.47
CDY56728	Canola	cytosol, mitochondrion	79.47	75.95
Zm00001d049668_P001	Maize	cytosol, mitochondrion	91.39	75.41
KRH07853	Soybean	cytosol	32.45	73.13
GSMUA_Achr1P16660_001	Banana	plastid	81.46	66.49
CDX74728	Canola	endoplasmic reticulum, extracellular	72.19	59.56
Os02t0677800-01	Rice	mitochondrion	37.09	50.91
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	33.77	38.64

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	MapMan:17.1.3.1.14	ProteinID:AQK78344.1	UniProt:B6SJ18	EMBL:BT054744
EMBL:EU952733	EMBL:EU952834	EMBL:EU952921	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
HAMAP:MF_01343_A	PFAM:PF00312	PFAM:PF08069	ScanProsite:PS00362	PANTHER:PTHR11885	PANTHER:PTHR11885:SF7
InterPro:Ribosomal_S13/S15_N	InterPro:Ribosomal_S15	InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd	SMART:SM01386	SMART:SM01387
SUPFAM:SSF47060	UniParc:UPI000182AF23	EnsemblPlantsGene:Zm00001d035094	EnsemblPlants:Zm00001d035094_P001	EnsemblPlants:Zm00001d035094_T001	:

Description

40S ribosomal protein S13-1

Coordinates

chr6:-:4936802..4938697

Molecular Weight (calculated)

17214.4 Da

IEP (calculated)

11.215

GRAVY (calculated)

-0.462

Length

151 amino acids

Sequence
(BLAST)

001: MGRMHSRGKG ISSSALPYKR TPPIWLKTAT TEVEEMITKA AKKGQMPSQI GVLLRDQHGI PLVKSVTGSK ILRILKAHGL APEIPEDLYF LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK RTKKLPPTWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.