Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G217400.1 | Wheat | golgi | 83.43 | 100.0 |
| TraesCS7A01G316800.1 | Wheat | cytosol, mitochondrion | 83.43 | 100.0 |
| TraesCS7D01G313300.1 | Wheat | cytosol, mitochondrion | 83.43 | 100.0 |
| Zm00001d049666_P001 | Maize | mitochondrion | 80.11 | 96.03 |
| EES14427 | Sorghum | mitochondrion | 80.11 | 96.03 |
| Zm00001d035094_P001 | Maize | mitochondrion | 79.56 | 95.36 |
| Os08t0117300-01 | Rice | nucleus | 79.56 | 95.36 |
| EES14430 | Sorghum | mitochondrion | 79.56 | 95.36 |
| VIT_15s0048g00670.t01 | Wine grape | mitochondrion | 74.03 | 88.74 |
| AT3G60770.1 | Thale cress | cytosol, mitochondrion | 73.48 | 88.08 |
| AT4G00100.1 | Thale cress | cytosol, mitochondrion | 73.48 | 88.08 |
| Os08t0117200-00 | Rice | nucleus | 76.8 | 87.97 |
| CDY37034 | Canola | mitochondrion | 72.93 | 87.42 |
| CDX74731 | Canola | mitochondrion | 72.93 | 87.42 |
| PGSC0003DMT400017986 | Potato | mitochondrion | 72.93 | 87.42 |
| Solyc05g051000.2.1 | Tomato | nucleus | 72.93 | 87.42 |
| Bra040316.1-P | Field mustard | mitochondrion | 72.93 | 87.42 |
| CDY57102 | Canola | mitochondrion | 72.93 | 87.42 |
| CDY51811 | Canola | mitochondrion | 72.93 | 87.42 |
| Bra004901.1-P | Field mustard | mitochondrion | 72.93 | 87.42 |
| Solyc10g018250.1.1 | Tomato | mitochondrion | 72.38 | 86.75 |
| Solyc11g072260.1.1 | Tomato | nucleus | 72.38 | 86.75 |
| Solyc03g083530.2.1 | Tomato | mitochondrion | 72.38 | 86.75 |
| Solyc01g091220.2.1 | Tomato | mitochondrion | 72.38 | 86.75 |
| PGSC0003DMT400070434 | Potato | mitochondrion | 72.38 | 86.75 |
| PGSC0003DMT400066770 | Potato | mitochondrion | 72.38 | 86.75 |
| PGSC0003DMT400059239 | Potato | mitochondrion | 72.38 | 86.75 |
| PGSC0003DMT400024801 | Potato | mitochondrion | 72.38 | 86.75 |
| Bra007556.1-P | Field mustard | mitochondrion | 72.38 | 86.75 |
| Bra003427.1-P | Field mustard | mitochondrion | 72.38 | 86.75 |
| KRH57296 | Soybean | mitochondrion | 72.38 | 86.75 |
| KRH57298 | Soybean | mitochondrion | 72.38 | 86.75 |
| CDX89075 | Canola | cytosol, mitochondrion | 72.38 | 86.75 |
| KRH57294 | Soybean | mitochondrion | 72.38 | 86.75 |
| KRH04022 | Soybean | nucleus | 72.38 | 86.75 |
| Bra014472.1-P | Field mustard | mitochondrion | 72.38 | 86.75 |
| CDX67841 | Canola | extracellular | 72.38 | 86.75 |
| CDY48375 | Canola | mitochondrion | 72.38 | 86.75 |
| CDY41142 | Canola | mitochondrion | 72.38 | 86.75 |
| CDX71784 | Canola | cytosol, mitochondrion | 71.82 | 86.09 |
| VIT_16s0022g01590.t01 | Wine grape | mitochondrion | 71.27 | 85.43 |
| HORVU7Hr1G075250.1 | Barley | plasma membrane | 84.53 | 83.15 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 66.85 | 80.13 |
| GSMUA_Achr6P01570_001 | Banana | mitochondrion | 66.85 | 79.61 |
| CDY56728 | Canola | cytosol, mitochondrion | 67.4 | 77.22 |
| Zm00001d049668_P001 | Maize | cytosol, mitochondrion | 75.14 | 74.32 |
| KRH07853 | Soybean | cytosol | 27.07 | 73.13 |
| GSMUA_Achr1P16660_001 | Banana | plastid | 71.82 | 70.27 |
| CDX74728 | Canola | endoplasmic reticulum, extracellular | 60.77 | 60.11 |
| Os02t0677800-01 | Rice | mitochondrion | 29.83 | 49.09 |
| Solyc12g077580.1.1 | Tomato | endoplasmic reticulum, extracellular | 29.28 | 40.15 |
| HORVU2Hr1G037940.1 | Barley | cytosol | 29.83 | 25.59 |
Protein Annotations
| Gene3D:1.10.287.10 | Gene3D:1.10.8.1030 | MapMan:17.1.3.1.14 | UniProt:A0A287WXF2 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU7Hr1G075290 | EnsemblPlants:HORVU7Hr1G075290.2 | HAMAP:MF_01343_A | PFAM:PF00312 | PFAM:PF08069 | ScanProsite:PS00362 |
| PANTHER:PTHR11885 | PANTHER:PTHR11885:SF7 | InterPro:Ribosomal_S13/S15_N | InterPro:Ribosomal_S15 | InterPro:Ribosomal_S15P | InterPro:S15_NS1_RNA-bd |
| SMART:SM01386 | SMART:SM01387 | SUPFAM:SSF47060 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000B47A3A9 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:435924302..435927229
Molecular Weight (calculated)
19846.6 Da
IEP (calculated)
11.216
GRAVY (calculated)
-0.152
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: LFYPLTTRAS LALPAAAAAA APLAAAAAAA MGRMHSRGKG ISSSALPYKR TPPSWVKTAV ADVDELITKA AKKGQMPSQI GVLLRDQHGI PLVKSVTGSK
101: ILRILKAHGL APEIPEDLYF LIKKAVAIRK HLERNRKDKD SKFRLILVES RIHRLARYYK RTKKLPPTWK YESTTASTLV A
101: ILRILKAHGL APEIPEDLYF LIKKAVAIRK HLERNRKDKD SKFRLILVES RIHRLARYYK RTKKLPPTWK YESTTASTLV A
001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
Arabidopsis Description
RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.