Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G60770.1 | Thale cress | cytosol, mitochondrion | 99.34 | 99.34 |
| Bra004901.1-P | Field mustard | mitochondrion | 96.69 | 96.69 |
| Bra040316.1-P | Field mustard | mitochondrion | 96.69 | 96.69 |
| CDX74731 | Canola | mitochondrion | 96.69 | 96.69 |
| CDY37034 | Canola | mitochondrion | 96.69 | 96.69 |
| CDY51811 | Canola | mitochondrion | 96.69 | 96.69 |
| CDY57102 | Canola | mitochondrion | 96.69 | 96.69 |
| PGSC0003DMT400017986 | Potato | mitochondrion | 94.04 | 94.04 |
| KRH57296 | Soybean | mitochondrion | 93.38 | 93.38 |
| PGSC0003DMT400070434 | Potato | mitochondrion | 93.38 | 93.38 |
| PGSC0003DMT400066770 | Potato | mitochondrion | 93.38 | 93.38 |
| PGSC0003DMT400059239 | Potato | mitochondrion | 93.38 | 93.38 |
| PGSC0003DMT400024801 | Potato | mitochondrion | 93.38 | 93.38 |
| VIT_15s0048g00670.t01 | Wine grape | mitochondrion | 93.38 | 93.38 |
| KRH57298 | Soybean | mitochondrion | 93.38 | 93.38 |
| KRH57294 | Soybean | mitochondrion | 93.38 | 93.38 |
| KRH04022 | Soybean | nucleus | 93.38 | 93.38 |
| VIT_16s0022g01590.t01 | Wine grape | mitochondrion | 90.73 | 90.73 |
| TraesCS7D01G313200.1 | Wheat | cytosol, mitochondrion | 88.08 | 88.08 |
| TraesCS7B01G217400.1 | Wheat | golgi | 88.08 | 88.08 |
| TraesCS7B01G217300.1 | Wheat | cytosol, mitochondrion | 88.08 | 88.08 |
| TraesCS7A01G316800.1 | Wheat | cytosol, mitochondrion | 88.08 | 88.08 |
| TraesCS7A01G316200.1 | Wheat | cytosol, mitochondrion | 88.08 | 88.08 |
| TraesCS7D01G313300.1 | Wheat | cytosol, mitochondrion | 88.08 | 88.08 |
| Os08t0117300-01 | Rice | nucleus | 88.08 | 88.08 |
| Zm00001d049666_P001 | Maize | mitochondrion | 87.42 | 87.42 |
| EES14427 | Sorghum | mitochondrion | 87.42 | 87.42 |
| EES14430 | Sorghum | mitochondrion | 86.75 | 86.75 |
| Zm00001d035094_P001 | Maize | mitochondrion | 86.75 | 86.75 |
| GSMUA_Achr6P01570_001 | Banana | mitochondrion | 81.46 | 80.92 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 80.13 | 80.13 |
| Os08t0117200-00 | Rice | nucleus | 82.78 | 79.11 |
| KRH07853 | Soybean | cytosol | 34.44 | 77.61 |
| HORVU7Hr1G075290.2 | Barley | plastid | 88.08 | 73.48 |
| HORVU7Hr1G075250.1 | Barley | plasma membrane | 88.08 | 72.28 |
| TraesCS2A01G184000.1 | Wheat | cytosol | 72.19 | 72.19 |
| TraesCS2B01G223400.1 | Wheat | cytosol | 72.19 | 72.19 |
| TraesCS2D01G203800.1 | Wheat | cytosol | 72.19 | 72.19 |
| Os07t0572900-01 | Rice | mitochondrion | 69.54 | 69.54 |
| EER97417 | Sorghum | cytosol, mitochondrion | 68.87 | 68.87 |
| Zm00001d049668_P001 | Maize | cytosol, mitochondrion | 81.46 | 67.21 |
| GSMUA_Achr1P16660_001 | Banana | plastid | 82.12 | 67.03 |
| Os02t0677800-01 | Rice | mitochondrion | 31.13 | 42.73 |
| Solyc12g077580.1.1 | Tomato | endoplasmic reticulum, extracellular | 35.1 | 40.15 |
| HORVU2Hr1G037940.1 | Barley | cytosol | 31.13 | 22.27 |
Protein Annotations
| Gene3D:1.10.287.10 | Gene3D:1.10.8.1030 | MapMan:17.1.3.1.14 | EntrezGene:828167 | UniProt:A0A178UZQ9 | ProteinID:AAC19305.1 |
| EMBL:AB031739 | ProteinID:AEE81823.1 | EMBL:AF370471 | ArrayExpress:AT4G00100 | EnsemblPlantsGene:AT4G00100 | RefSeq:AT4G00100 |
| TAIR:AT4G00100 | RefSeq:AT4G00100-TAIR-G | EnsemblPlants:AT4G00100.1 | TAIR:AT4G00100.1 | Symbol:ATRPS13A | EMBL:AY057544 |
| EMBL:AY088038 | EMBL:BT006543 | ProteinID:CAB80768.1 | GO:GO:0000911 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009965 | GO:GO:0009987 | GO:GO:0010090 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030154 | GO:GO:0030529 | GO:GO:0070181 |
| HAMAP:MF_01343_A | RefSeq:NP_567151.1 | ProteinID:OAO98312.1 | UniProt:P59224 | PFAM:PF00312 | PFAM:PF08069 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00362 | PANTHER:PTHR11885 | PANTHER:PTHR11885:SF7 | InterPro:Ribosomal_S13/S15_N |
| InterPro:Ribosomal_S15 | InterPro:Ribosomal_S15P | InterPro:S15_NS1_RNA-bd | SMART:SM01386 | SMART:SM01387 | SUPFAM:SSF47060 |
| UniParc:UPI0000132EDD | EMBL:Z29915 | : | : | : | : |
Description
RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
Coordinates
chr4:+:36916..38384
Molecular Weight (calculated)
17086.1 Da
IEP (calculated)
11.074
GRAVY (calculated)
-0.499
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.