CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57298	Soybean	mitochondrion	100.0	100.0
KRH57296	Soybean	mitochondrion	100.0	100.0
KRH57294	Soybean	mitochondrion	100.0	100.0
VIT_15s0048g00670.t01	Wine grape	mitochondrion	97.35	97.35
PGSC0003DMT400070434	Potato	mitochondrion	96.03	96.03
PGSC0003DMT400066770	Potato	mitochondrion	96.03	96.03
PGSC0003DMT400059239	Potato	mitochondrion	96.03	96.03
PGSC0003DMT400024801	Potato	mitochondrion	96.03	96.03
PGSC0003DMT400017986	Potato	mitochondrion	95.36	95.36
VIT_16s0022g01590.t01	Wine grape	mitochondrion	94.7	94.7
AT4G00100.1	Thale cress	cytosol, mitochondrion	93.38	93.38
AT3G60770.1	Thale cress	cytosol, mitochondrion	92.72	92.72
CDY41142	Canola	mitochondrion	92.05	92.05
CDY48375	Canola	mitochondrion	92.05	92.05
CDX67841	Canola	extracellular	92.05	92.05
Bra014472.1-P	Field mustard	mitochondrion	92.05	92.05
Bra007556.1-P	Field mustard	mitochondrion	92.05	92.05
Bra003427.1-P	Field mustard	mitochondrion	92.05	92.05
CDY37034	Canola	mitochondrion	91.39	91.39
Bra040316.1-P	Field mustard	mitochondrion	91.39	91.39
CDX71784	Canola	cytosol, mitochondrion	91.39	91.39
Bra004901.1-P	Field mustard	mitochondrion	91.39	91.39
CDX74731	Canola	mitochondrion	91.39	91.39
CDY57102	Canola	mitochondrion	91.39	91.39
CDX89075	Canola	cytosol, mitochondrion	91.39	91.39
CDY51811	Canola	mitochondrion	91.39	91.39
Os08t0117300-01	Rice	nucleus	88.08	88.08
EES14427	Sorghum	mitochondrion	87.42	87.42
Zm00001d049666_P001	Maize	mitochondrion	87.42	87.42
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7A01G316200.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7B01G217300.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7B01G217400.1	Wheat	golgi	86.75	86.75
TraesCS7D01G313200.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	86.75	86.75
EES14430	Sorghum	mitochondrion	86.75	86.75
Zm00001d035094_P001	Maize	mitochondrion	86.75	86.75
GSMUA_AchrUn_...	Banana	mitochondrion	84.11	84.11
GSMUA_Achr6P01570_001	Banana	mitochondrion	84.11	83.55
CDY56728	Canola	cytosol, mitochondrion	86.09	82.28
Os08t0117200-00	Rice	nucleus	82.78	79.11
KRH07853	Soybean	cytosol	35.1	79.1
HORVU7Hr1G075290.2	Barley	plastid	86.75	72.38
TraesCS2B01G223400.1	Wheat	cytosol	71.52	71.52
TraesCS2D01G203800.1	Wheat	cytosol	71.52	71.52
TraesCS2A01G184000.1	Wheat	cytosol	71.52	71.52
HORVU7Hr1G075250.1	Barley	plasma membrane	86.75	71.2
GSMUA_Achr1P16660_001	Banana	plastid	86.09	70.27
Os07t0572900-01	Rice	mitochondrion	68.87	68.87
EER97417	Sorghum	cytosol, mitochondrion	68.21	68.21
Zm00001d049668_P001	Maize	cytosol, mitochondrion	81.46	67.21
CDX74728	Canola	endoplasmic reticulum, extracellular	76.16	62.84
Os02t0677800-01	Rice	mitochondrion	31.79	43.64
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	36.42	41.67
HORVU2Hr1G037940.1	Barley	cytosol	30.46	21.8

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	EntrezGene:100781750	EntrezGene:100782821	EntrezGene:100790163	MapMan:17.1.3.1.14
EntrezGene:547745	ProteinID:ABX71080.1	EMBL:AY453393	UniProt:B6CBQ9	EMBL:BT089208	EnsemblPlantsGene:GLYMA_17G134800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	GO:GO:0070181	EnsemblPlants:KRH04022
ProteinID:KRH04022	ProteinID:KRH04022.1	ProteinID:KRH57294.1	ProteinID:KRH57296.1	ProteinID:KRH57298.1	ProteinID:KRH57299.1
HAMAP:MF_01343_A	UniProt:P62302	PFAM:PF00312	PFAM:PF08069	ScanProsite:PS00362	PANTHER:PTHR11885
PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N	InterPro:Ribosomal_S15	InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd	SMART:SM01386
SMART:SM01387	SUPFAM:SSF47060	UniParc:UPI0000253D0F	:	:	:

Description

RPS13hypothetical protein

Coordinates

chr17:-:10848905..10850820

Molecular Weight (calculated)

17141.1 Da

IEP (calculated)

11.045

GRAVY (calculated)

-0.497

Length

151 amino acids

Sequence
(BLAST)

001: MGRMHSRGKG ISSSALPYKR TPPSWLKISS QDVEENICKF AKKGLTPSQI GVILRDSHGI AQVNSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVSIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.