Factsheet for Bra003427.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007556.1-P	Field mustard	mitochondrion	100.0	100.0
Bra014472.1-P	Field mustard	mitochondrion	100.0	100.0
CDX67841	Canola	extracellular	100.0	100.0
CDY41142	Canola	mitochondrion	100.0	100.0
Bra004901.1-P	Field mustard	mitochondrion	96.69	96.69
Bra040316.1-P	Field mustard	mitochondrion	96.69	96.69
AT3G60770.1	Thale cress	cytosol, mitochondrion	96.69	96.69
PGSC0003DMT400017986	Potato	mitochondrion	92.72	92.72
KRH57296	Soybean	mitochondrion	92.05	92.05
PGSC0003DMT400070434	Potato	mitochondrion	92.05	92.05
PGSC0003DMT400066770	Potato	mitochondrion	92.05	92.05
PGSC0003DMT400059239	Potato	mitochondrion	92.05	92.05
PGSC0003DMT400024801	Potato	mitochondrion	92.05	92.05
VIT_15s0048g00670.t01	Wine grape	mitochondrion	92.05	92.05
KRH57298	Soybean	mitochondrion	92.05	92.05
KRH57294	Soybean	mitochondrion	92.05	92.05
KRH04022	Soybean	nucleus	92.05	92.05
VIT_16s0022g01590.t01	Wine grape	mitochondrion	89.4	89.4
TraesCS7D01G313200.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7B01G217400.1	Wheat	golgi	86.75	86.75
TraesCS7B01G217300.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7A01G316200.1	Wheat	cytosol, mitochondrion	86.75	86.75
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	86.75	86.75
Os08t0117300-01	Rice	nucleus	86.75	86.75
Zm00001d049666_P001	Maize	mitochondrion	86.09	86.09
EES14427	Sorghum	mitochondrion	86.09	86.09
EES14430	Sorghum	mitochondrion	85.43	85.43
Zm00001d035094_P001	Maize	mitochondrion	85.43	85.43
GSMUA_Achr6P01570_001	Banana	mitochondrion	81.46	80.92
Os08t0117200-00	Rice	nucleus	82.78	79.11
GSMUA_AchrUn_...	Banana	mitochondrion	78.81	78.81
KRH07853	Soybean	cytosol	34.44	77.61
HORVU7Hr1G075290.2	Barley	plastid	86.75	72.38
TraesCS2A01G184000.1	Wheat	cytosol	71.52	71.52
TraesCS2B01G223400.1	Wheat	cytosol	71.52	71.52
TraesCS2D01G203800.1	Wheat	cytosol	71.52	71.52
HORVU7Hr1G075250.1	Barley	plasma membrane	86.75	71.2
Os07t0572900-01	Rice	mitochondrion	68.87	68.87
EER97417	Sorghum	cytosol, mitochondrion	68.21	68.21
Zm00001d049668_P001	Maize	cytosol, mitochondrion	80.13	66.12
GSMUA_Achr1P16660_001	Banana	plastid	80.79	65.95
Os02t0677800-01	Rice	mitochondrion	31.79	43.64
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	35.1	40.15
HORVU2Hr1G037940.1	Barley	cytosol	30.46	21.8

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	MapMan:17.1.3.1.14	EnsemblPlantsGene:Bra003427	EnsemblPlants:Bra003427.1	EnsemblPlants:Bra003427.1-P
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	UniProt:M4CGU4	HAMAP:MF_01343_A	PFAM:PF00312
PFAM:PF08069	ScanProsite:PS00362	PANTHER:PTHR11885	PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N	InterPro:Ribosomal_S15
InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd	SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060	UniParc:UPI00018C6883

Description

AT4G00100 (E=4e-081) ATRPS13A, RPS13, PFL2 | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A); structural constituent of ribosome

Coordinates

chrA07:-:13150858..13151866

Molecular Weight (calculated)

17077.1 Da

IEP (calculated)

11.027

GRAVY (calculated)

-0.506

Length

151 amino acids

Sequence
(BLAST)

001: MGRLHSKGKG ISASALPYKR SPPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGNK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.