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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G00100.1 Thale cress cytosol, mitochondrion 99.34 99.34
Bra003427.1-P Field mustard mitochondrion 96.69 96.69
Bra007556.1-P Field mustard mitochondrion 96.69 96.69
Bra014472.1-P Field mustard mitochondrion 96.69 96.69
CDX67841 Canola extracellular 96.69 96.69
CDY41142 Canola mitochondrion 96.69 96.69
CDY48375 Canola mitochondrion 96.69 96.69
CDX71784 Canola cytosol, mitochondrion 96.03 96.03
CDX89075 Canola cytosol, mitochondrion 96.03 96.03
PGSC0003DMT400017986 Potato mitochondrion 94.04 94.04
PGSC0003DMT400070434 Potato mitochondrion 93.38 93.38
PGSC0003DMT400024801 Potato mitochondrion 93.38 93.38
PGSC0003DMT400059239 Potato mitochondrion 93.38 93.38
PGSC0003DMT400066770 Potato mitochondrion 93.38 93.38
VIT_15s0048g00670.t01 Wine grape mitochondrion 92.72 92.72
KRH57298 Soybean mitochondrion 92.72 92.72
KRH57296 Soybean mitochondrion 92.72 92.72
KRH57294 Soybean mitochondrion 92.72 92.72
KRH04022 Soybean nucleus 92.72 92.72
VIT_16s0022g01590.t01 Wine grape mitochondrion 90.07 90.07
Os08t0117300-01 Rice nucleus 88.08 88.08
TraesCS7A01G316200.1 Wheat cytosol, mitochondrion 88.08 88.08
TraesCS7A01G316800.1 Wheat cytosol, mitochondrion 88.08 88.08
TraesCS7B01G217300.1 Wheat cytosol, mitochondrion 88.08 88.08
TraesCS7B01G217400.1 Wheat golgi 88.08 88.08
TraesCS7D01G313200.1 Wheat cytosol, mitochondrion 88.08 88.08
TraesCS7D01G313300.1 Wheat cytosol, mitochondrion 88.08 88.08
EES14427 Sorghum mitochondrion 87.42 87.42
Zm00001d049666_P001 Maize mitochondrion 87.42 87.42
Zm00001d035094_P001 Maize mitochondrion 86.75 86.75
EES14430 Sorghum mitochondrion 86.75 86.75
CDY56728 Canola cytosol, mitochondrion 90.73 86.71
GSMUA_Achr6P01570_001 Banana mitochondrion 81.46 80.92
GSMUA_AchrUn_... Banana mitochondrion 80.13 80.13
Os08t0117200-00 Rice nucleus 82.78 79.11
KRH07853 Soybean cytosol 34.44 77.61
HORVU7Hr1G075290.2 Barley plastid 88.08 73.48
HORVU7Hr1G075250.1 Barley plasma membrane 88.08 72.28
TraesCS2D01G203800.1 Wheat cytosol 72.19 72.19
TraesCS2B01G223400.1 Wheat cytosol 72.19 72.19
TraesCS2A01G184000.1 Wheat cytosol 72.19 72.19
Os07t0572900-01 Rice mitochondrion 69.54 69.54
EER97417 Sorghum cytosol, mitochondrion 68.87 68.87
Zm00001d049668_P001 Maize cytosol, mitochondrion 81.46 67.21
GSMUA_Achr1P16660_001 Banana plastid 82.12 67.03
Os02t0677800-01 Rice mitochondrion 31.13 42.73
Solyc12g077580.1.1 Tomato endoplasmic reticulum, extracellular 35.1 40.15
HORVU2Hr1G037940.1 Barley cytosol 31.13 22.27
Protein Annotations
Gene3D:1.10.287.10Gene3D:1.10.8.1030MapMan:17.1.3.1.14EntrezGene:825248UniProt:A0A178VM26ProteinID:AEE80106.1
EMBL:AF378861EMBL:AF380636ArrayExpress:AT3G60770EnsemblPlantsGene:AT3G60770RefSeq:AT3G60770TAIR:AT3G60770
RefSeq:AT3G60770-TAIR-GEnsemblPlants:AT3G60770.1TAIR:AT3G60770.1EMBL:AY052731EMBL:AY056088EMBL:AY090366
ProteinID:CAB82681.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735GO:GO:0005198
GO:GO:0005488GO:GO:0005575GO:GO:0005618GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005730GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0019538
GO:GO:0022626GO:GO:0022627GO:GO:0030312GO:GO:0030529GO:GO:0070181HAMAP:MF_01343_A
RefSeq:NP_567104.1ProteinID:OAP06798.1UniProt:P59223PFAM:PF00312PFAM:PF08069PO:PO:0000013
PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025195PO:PO:0025281ScanProsite:PS00362PANTHER:PTHR11885PANTHER:PTHR11885:SF7
InterPro:Ribosomal_S13/S15_NInterPro:Ribosomal_S15InterPro:Ribosomal_S15PInterPro:S15_NS1_RNA-bdSMART:SM01386SMART:SM01387
SUPFAM:SSF47060UniParc:UPI0000132ED2EMBL:Z17784:::
Description
RPS13A40S ribosomal protein S13-1 [Source:UniProtKB/Swiss-Prot;Acc:P59223]
Coordinates
chr3:-:22460189..22461779
Molecular Weight (calculated)
17096.1 Da
IEP (calculated)
11.074
GRAVY (calculated)
-0.505
Length
151 amino acids
Sequence
(BLAST)
001: MGRMHSRGKG ISASALPYKR SSPSWLKTTP QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.