Factsheet for VIT_15s0048g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57298	Soybean	mitochondrion	97.35	97.35
KRH57296	Soybean	mitochondrion	97.35	97.35
KRH57294	Soybean	mitochondrion	97.35	97.35
KRH04022	Soybean	nucleus	97.35	97.35
VIT_16s0022g01590.t01	Wine grape	mitochondrion	96.03	96.03
Solyc10g018250.1.1	Tomato	mitochondrion	96.03	96.03
Solyc01g091220.2.1	Tomato	mitochondrion	96.03	96.03
PGSC0003DMT400066770	Potato	mitochondrion	96.03	96.03
PGSC0003DMT400024801	Potato	mitochondrion	96.03	96.03
Solyc05g051000.2.1	Tomato	nucleus	95.36	95.36
PGSC0003DMT400017986	Potato	mitochondrion	95.36	95.36
AT4G00100.1	Thale cress	cytosol, mitochondrion	93.38	93.38
AT3G60770.1	Thale cress	cytosol, mitochondrion	92.72	92.72
CDY41142	Canola	mitochondrion	92.05	92.05
CDY48375	Canola	mitochondrion	92.05	92.05
Bra003427.1-P	Field mustard	mitochondrion	92.05	92.05
Bra007556.1-P	Field mustard	mitochondrion	92.05	92.05
Bra014472.1-P	Field mustard	mitochondrion	92.05	92.05
CDX67841	Canola	extracellular	92.05	92.05
CDX71784	Canola	cytosol, mitochondrion	91.39	91.39
Bra004901.1-P	Field mustard	mitochondrion	91.39	91.39
Bra040316.1-P	Field mustard	mitochondrion	91.39	91.39
CDY37034	Canola	mitochondrion	91.39	91.39
CDX74731	Canola	mitochondrion	91.39	91.39
CDX89075	Canola	cytosol, mitochondrion	91.39	91.39
CDY51811	Canola	mitochondrion	91.39	91.39
CDY57102	Canola	mitochondrion	91.39	91.39
Os08t0117300-01	Rice	nucleus	90.07	90.07
Zm00001d049666_P001	Maize	mitochondrion	89.4	89.4
EES14427	Sorghum	mitochondrion	89.4	89.4
TraesCS7D01G313200.1	Wheat	cytosol, mitochondrion	88.74	88.74
TraesCS7B01G217400.1	Wheat	golgi	88.74	88.74
TraesCS7B01G217300.1	Wheat	cytosol, mitochondrion	88.74	88.74
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	88.74	88.74
TraesCS7A01G316200.1	Wheat	cytosol, mitochondrion	88.74	88.74
EES14430	Sorghum	mitochondrion	88.74	88.74
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	88.74	88.74
Zm00001d035094_P001	Maize	mitochondrion	88.74	88.74
GSMUA_AchrUn_...	Banana	mitochondrion	85.43	85.43
GSMUA_Achr6P01570_001	Banana	mitochondrion	85.43	84.87
CDY56728	Canola	cytosol, mitochondrion	86.09	82.28
Os08t0117200-00	Rice	nucleus	84.77	81.01
KRH07853	Soybean	cytosol	33.77	76.12
HORVU7Hr1G075290.2	Barley	plastid	88.74	74.03
TraesCS2A01G184000.1	Wheat	cytosol	72.85	72.85
TraesCS2B01G223400.1	Wheat	cytosol	72.85	72.85
TraesCS2D01G203800.1	Wheat	cytosol	72.85	72.85
HORVU7Hr1G075250.1	Barley	plasma membrane	88.74	72.83
GSMUA_Achr1P16660_001	Banana	plastid	87.42	71.35
Os07t0572900-01	Rice	mitochondrion	69.54	69.54
EER97417	Sorghum	cytosol, mitochondrion	69.54	69.54
Zm00001d049668_P001	Maize	cytosol, mitochondrion	83.44	68.85
CDX74728	Canola	endoplasmic reticulum, extracellular	76.16	62.84
Os02t0677800-01	Rice	mitochondrion	32.45	44.55
HORVU2Hr1G037940.1	Barley	cytosol	31.13	22.27

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	EntrezGene:100242146	wikigene:100242146	MapMan:17.1.3.1.14	UniProt:A5B3K9
EMBL:AM445443	ProteinID:CAN69640	ProteinID:CAN69640.1	ProteinID:CBI38874	ProteinID:CBI38874.3	EMBL:FN596739
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	GO:GO:0070181	EntrezGene:LOC100242146
wikigene:LOC100242146	HAMAP:MF_01343_A	PFAM:PF00312	PFAM:PF08069	ScanProsite:PS00362	PANTHER:PTHR11885
PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N	InterPro:Ribosomal_S15	InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd	SMART:SM01386
SMART:SM01387	SUPFAM:SSF47060	TIGR:TC58646	UniParc:UPI000151FF64	ArrayExpress:VIT_15s0048g00670	EnsemblPlantsGene:VIT_15s0048g00670
EnsemblPlants:VIT_15s0048g00670.t01	unigene:Vvi.11243	RefSeq:XP_002280012	RefSeq:XP_002280012.1	RefSeq:XP_002280012.3	:

Description

No Description!

Coordinates

chr15:-:14794400..14798138

Molecular Weight (calculated)

17185.2 Da

IEP (calculated)

11.126

GRAVY (calculated)

-0.499

Length

151 amino acids

Sequence
(BLAST)

001: MGRMHSRGKG ISSSALPYKR TPPSWLKISS QDVEENICKF AKKGMTPSQI GVILRDSHGI AQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK RTKKLPPVWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.