Factsheet for Solyc05g051000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017986	Potato	mitochondrion	100.0	100.0
Solyc11g072260.1.1	Tomato	nucleus	99.34	99.34
Solyc10g018250.1.1	Tomato	mitochondrion	99.34	99.34
Solyc03g083530.2.1	Tomato	mitochondrion	99.34	99.34
Solyc01g091220.2.1	Tomato	mitochondrion	99.34	99.34
VIT_15s0048g00670.t01	Wine grape	mitochondrion	95.36	95.36
Os08t0117300-01	Rice	nucleus	89.4	89.4
EES14427	Sorghum	mitochondrion	88.74	88.74
Zm00001d049666_P001	Maize	mitochondrion	88.74	88.74
EES14430	Sorghum	mitochondrion	88.08	88.08
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	87.42	87.42
TraesCS7D01G313200.1	Wheat	cytosol, mitochondrion	87.42	87.42
TraesCS7B01G217400.1	Wheat	golgi	87.42	87.42
TraesCS7B01G217300.1	Wheat	cytosol, mitochondrion	87.42	87.42
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	87.42	87.42
TraesCS7A01G316200.1	Wheat	cytosol, mitochondrion	87.42	87.42
Zm00001d035094_P001	Maize	mitochondrion	87.42	87.42
GSMUA_AchrUn_...	Banana	mitochondrion	85.43	85.43
GSMUA_Achr6P01570_001	Banana	mitochondrion	84.11	83.55
Os08t0117200-00	Rice	nucleus	84.11	80.38
TraesCS2A01G184000.1	Wheat	cytosol	73.51	73.51
TraesCS2B01G223400.1	Wheat	cytosol	73.51	73.51
TraesCS2D01G203800.1	Wheat	cytosol	73.51	73.51
HORVU7Hr1G075290.2	Barley	plastid	87.42	72.93
HORVU7Hr1G075250.1	Barley	plasma membrane	87.42	71.74
GSMUA_Achr1P16660_001	Banana	plastid	86.09	70.27
Os07t0572900-01	Rice	mitochondrion	70.2	70.2
Zm00001d049668_P001	Maize	cytosol, mitochondrion	82.78	68.31
EER97417	Sorghum	cytosol, mitochondrion	68.21	68.21
Os02t0677800-01	Rice	mitochondrion	31.79	43.64
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	35.76	40.91
HORVU2Hr1G037940.1	Barley	cytosol	31.79	22.75

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	MapMan:17.1.3.1.14	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627
GO:GO:0030529	GO:GO:0070181	UniProt:K4C1D2	HAMAP:MF_01343_A	PFAM:PF00312	PFAM:PF08069
ScanProsite:PS00362	PANTHER:PTHR11885	PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N	InterPro:Ribosomal_S15	InterPro:Ribosomal_S15P
InterPro:S15_NS1_RNA-bd	SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060	EnsemblPlantsGene:Solyc05g051000.2	EnsemblPlants:Solyc05g051000.2.1
UniParc:UPI0001BA2298	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:61204429..61207566

Molecular Weight (calculated)

17050.1 Da

IEP (calculated)

11.074

GRAVY (calculated)

-0.470

Length

151 amino acids

Sequence
(BLAST)

001: MGRMHSRGKG ISASALPYKR TPPSWLKTSA PDVEDNICKF AKKGLTPSQI GVILRDSHGI AQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.