Factsheet for Os08t0117200-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0117300-01	Rice	nucleus	89.87	94.04
TraesCS7B01G217400.1	Wheat	golgi	87.97	92.05
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	87.97	92.05
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	87.97	92.05
EES14427	Sorghum	mitochondrion	87.97	92.05
Zm00001d049666_P001	Maize	mitochondrion	87.97	92.05
EES14430	Sorghum	mitochondrion	87.34	91.39
Zm00001d035094_P001	Maize	mitochondrion	86.71	90.73
VIT_15s0048g00670.t01	Wine grape	mitochondrion	81.01	84.77
Solyc05g051000.2.1	Tomato	nucleus	80.38	84.11
PGSC0003DMT400017986	Potato	mitochondrion	80.38	84.11
PGSC0003DMT400059239	Potato	mitochondrion	79.75	83.44
PGSC0003DMT400024801	Potato	mitochondrion	79.75	83.44
PGSC0003DMT400066770	Potato	mitochondrion	79.75	83.44
PGSC0003DMT400070434	Potato	mitochondrion	79.75	83.44
Solyc01g091220.2.1	Tomato	mitochondrion	79.75	83.44
Solyc03g083530.2.1	Tomato	mitochondrion	79.75	83.44
Solyc10g018250.1.1	Tomato	mitochondrion	79.75	83.44
Solyc11g072260.1.1	Tomato	nucleus	79.75	83.44
AT4G00100.1	Thale cress	cytosol, mitochondrion	79.11	82.78
KRH57298	Soybean	mitochondrion	79.11	82.78
KRH57296	Soybean	mitochondrion	79.11	82.78
KRH57294	Soybean	mitochondrion	79.11	82.78
AT3G60770.1	Thale cress	cytosol, mitochondrion	79.11	82.78
CDY41142	Canola	mitochondrion	79.11	82.78
Bra007556.1-P	Field mustard	mitochondrion	79.11	82.78
Bra014472.1-P	Field mustard	mitochondrion	79.11	82.78
Bra040316.1-P	Field mustard	mitochondrion	79.11	82.78
CDX67841	Canola	extracellular	79.11	82.78
CDX74731	Canola	mitochondrion	79.11	82.78
CDX89075	Canola	cytosol, mitochondrion	79.11	82.78
CDY37034	Canola	mitochondrion	79.11	82.78
CDY48375	Canola	mitochondrion	79.11	82.78
CDY51811	Canola	mitochondrion	79.11	82.78
Bra004901.1-P	Field mustard	mitochondrion	79.11	82.78
CDY57102	Canola	mitochondrion	79.11	82.78
Bra003427.1-P	Field mustard	mitochondrion	79.11	82.78
KRH04022	Soybean	nucleus	79.11	82.78
CDX71784	Canola	cytosol, mitochondrion	78.48	82.12
VIT_16s0022g01590.t01	Wine grape	mitochondrion	77.85	81.46
GSMUA_AchrUn_...	Banana	mitochondrion	74.05	77.48
HORVU7Hr1G075290.2	Barley	plastid	87.97	76.8
GSMUA_Achr6P01570_001	Banana	mitochondrion	73.42	76.32
CDY56728	Canola	cytosol, mitochondrion	73.42	73.42
KRH07853	Soybean	cytosol	31.01	73.13
Zm00001d049668_P001	Maize	cytosol, mitochondrion	82.28	71.04
Os07t0572900-01	Rice	mitochondrion	66.46	69.54
GSMUA_Achr1P16660_001	Banana	plastid	75.32	64.32
CDX74728	Canola	endoplasmic reticulum, extracellular	68.99	59.56
Os02t0677800-01	Rice	mitochondrion	36.71	52.73
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	32.91	39.39

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	MapMan:17.1.3.1.14	UniProt:A0A0P0XAY7	ProteinID:BAT03563.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	HAMAP:MF_01343_A	EnsemblPlantsGene:Os08g0117200	EnsemblPlants:Os08t0117200-00
PFAM:PF00312	PFAM:PF08069	ScanProsite:PS00362	PANTHER:PTHR11885	PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N
InterPro:Ribosomal_S15	InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd	SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060
UniParc:UPI000393AB8A	:	:	:	:	:

Description

Similar to 40S ribosomal protein S13 (Fragment). (Os08t0117200-00)

Coordinates

chr8:-:956604..958484

Molecular Weight (calculated)

17772.0 Da

IEP (calculated)

10.971

GRAVY (calculated)

-0.404

Length

158 amino acids

Sequence
(BLAST)

001: NLCSNGGYST VCGRRKGISS SAIPYKRTPP SWVKTAAADV EEMIMKAAKK GQMPSQIGVV LRDQHGIPLV KSVTGSKILR ILKAHGLAPE IPEDLYFLIK
101: KAVAIRKHLE RNRKDKDSKF RLILVESRIH RLARYYKRTK KLPPTWKYES TTASTLVA

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.