Factsheet for Zm00001d049666_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14427	Sorghum	mitochondrion	100.0	100.0
Os08t0117300-01	Rice	nucleus	98.01	98.01
Zm00001d035094_P001	Maize	mitochondrion	97.35	97.35
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	96.03	96.03
TraesCS7B01G217400.1	Wheat	golgi	96.03	96.03
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	96.03	96.03
VIT_15s0048g00670.t01	Wine grape	mitochondrion	89.4	89.4
Bra004901.1-P	Field mustard	mitochondrion	88.74	88.74
Bra040316.1-P	Field mustard	mitochondrion	88.74	88.74
Solyc05g051000.2.1	Tomato	nucleus	88.74	88.74
PGSC0003DMT400017986	Potato	mitochondrion	88.74	88.74
CDX74731	Canola	mitochondrion	88.74	88.74
CDY37034	Canola	mitochondrion	88.74	88.74
CDY57102	Canola	mitochondrion	88.74	88.74
CDY51811	Canola	mitochondrion	88.74	88.74
PGSC0003DMT400024801	Potato	mitochondrion	88.08	88.08
PGSC0003DMT400066770	Potato	mitochondrion	88.08	88.08
PGSC0003DMT400059239	Potato	mitochondrion	88.08	88.08
PGSC0003DMT400070434	Potato	mitochondrion	88.08	88.08
Solyc01g091220.2.1	Tomato	mitochondrion	88.08	88.08
Solyc03g083530.2.1	Tomato	mitochondrion	88.08	88.08
Solyc10g018250.1.1	Tomato	mitochondrion	88.08	88.08
Solyc11g072260.1.1	Tomato	nucleus	88.08	88.08
Os08t0117200-00	Rice	nucleus	92.05	87.97
AT4G00100.1	Thale cress	cytosol, mitochondrion	87.42	87.42
KRH57298	Soybean	mitochondrion	87.42	87.42
KRH57294	Soybean	mitochondrion	87.42	87.42
KRH04022	Soybean	nucleus	87.42	87.42
VIT_16s0022g01590.t01	Wine grape	mitochondrion	87.42	87.42
KRH57296	Soybean	mitochondrion	87.42	87.42
AT3G60770.1	Thale cress	cytosol, mitochondrion	87.42	87.42
CDY41142	Canola	mitochondrion	86.09	86.09
Bra003427.1-P	Field mustard	mitochondrion	86.09	86.09
Bra007556.1-P	Field mustard	mitochondrion	86.09	86.09
Bra014472.1-P	Field mustard	mitochondrion	86.09	86.09
CDX67841	Canola	extracellular	86.09	86.09
CDX89075	Canola	cytosol, mitochondrion	86.09	86.09
CDY48375	Canola	mitochondrion	86.09	86.09
CDX71784	Canola	cytosol, mitochondrion	85.43	85.43
GSMUA_AchrUn_...	Banana	mitochondrion	80.79	80.79
GSMUA_Achr6P01570_001	Banana	mitochondrion	80.79	80.26
HORVU7Hr1G075290.2	Barley	plastid	96.03	80.11
Zm00001d049668_P001	Maize	cytosol, mitochondrion	94.04	77.6
CDY56728	Canola	cytosol, mitochondrion	80.13	76.58
KRH07853	Soybean	cytosol	32.45	73.13
GSMUA_Achr1P16660_001	Banana	plastid	82.78	67.57
CDX74728	Canola	endoplasmic reticulum, extracellular	72.19	59.56
Os02t0677800-01	Rice	mitochondrion	38.41	52.73
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	33.77	38.64

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	EntrezGene:100272255	MapMan:17.1.3.1.14	EntrezGene:542726	ProteinID:AQK51035.1
UniProt:B4FML8	EMBL:BT038356	EMBL:BT040163	EMBL:EU952507	EMBL:EU956336	EMBL:EU977066
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	HAMAP:MF_01343_A	PFAM:PF00312	PFAM:PF08069
ScanProsite:PS00362	PANTHER:PTHR11885	PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N	InterPro:Ribosomal_S15	InterPro:Ribosomal_S15P
InterPro:S15_NS1_RNA-bd	SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060	UniParc:UPI00017B6CBD	EnsemblPlantsGene:Zm00001d049666
EnsemblPlants:Zm00001d049666_P001	EnsemblPlants:Zm00001d049666_T001	:	:	:	:

Description

ribosomal protein13 ribosomal protein13

Coordinates

chr4:+:39268830..39270978

Molecular Weight (calculated)

17144.3 Da

IEP (calculated)

11.215

GRAVY (calculated)

-0.481

Length

151 amino acids

Sequence
(BLAST)

001: MGRMHSRGKG ISSSALPYKR TPPTWLKTAA SDVEEMITKA AKKGQMPSQI GVLLRDQHGI PLVKSVTGSK ILRILKAHGL APEIPEDLYF LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK RTKKLPPTWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.