Factsheet for GSMUA_Achr6P01570_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g00670.t01	Wine grape	mitochondrion	84.87	85.43
Solyc03g083530.2.1	Tomato	mitochondrion	84.21	84.77
PGSC0003DMT400024801	Potato	mitochondrion	84.21	84.77
PGSC0003DMT400059239	Potato	mitochondrion	84.21	84.77
PGSC0003DMT400066770	Potato	mitochondrion	84.21	84.77
PGSC0003DMT400070434	Potato	mitochondrion	84.21	84.77
Solyc01g091220.2.1	Tomato	mitochondrion	84.21	84.77
Solyc10g018250.1.1	Tomato	mitochondrion	84.21	84.77
Solyc11g072260.1.1	Tomato	nucleus	84.21	84.77
Solyc05g051000.2.1	Tomato	nucleus	83.55	84.11
GSMUA_AchrUn_...	Banana	mitochondrion	83.55	84.11
KRH57296	Soybean	mitochondrion	83.55	84.11
KRH57298	Soybean	mitochondrion	83.55	84.11
KRH57294	Soybean	mitochondrion	83.55	84.11
PGSC0003DMT400017986	Potato	mitochondrion	83.55	84.11
KRH04022	Soybean	nucleus	83.55	84.11
VIT_16s0022g01590.t01	Wine grape	mitochondrion	82.89	83.44
CDY57102	Canola	mitochondrion	82.24	82.78
CDY51811	Canola	mitochondrion	82.24	82.78
CDY37034	Canola	mitochondrion	82.24	82.78
CDX74731	Canola	mitochondrion	82.24	82.78
Bra040316.1-P	Field mustard	mitochondrion	82.24	82.78
Bra004901.1-P	Field mustard	mitochondrion	82.24	82.78
Os08t0117300-01	Rice	nucleus	80.92	81.46
AT4G00100.1	Thale cress	cytosol, mitochondrion	80.92	81.46
Bra014472.1-P	Field mustard	mitochondrion	80.92	81.46
CDX67841	Canola	extracellular	80.92	81.46
Bra003427.1-P	Field mustard	mitochondrion	80.92	81.46
EES14430	Sorghum	mitochondrion	80.92	81.46
CDX89075	Canola	cytosol, mitochondrion	80.92	81.46
CDY41142	Canola	mitochondrion	80.92	81.46
CDY48375	Canola	mitochondrion	80.92	81.46
Bra007556.1-P	Field mustard	mitochondrion	80.92	81.46
AT3G60770.1	Thale cress	cytosol, mitochondrion	80.92	81.46
EES14427	Sorghum	mitochondrion	80.26	80.79
CDX71784	Canola	cytosol, mitochondrion	80.26	80.79
Zm00001d035094_P001	Maize	mitochondrion	80.26	80.79
Zm00001d049666_P001	Maize	mitochondrion	80.26	80.79
TraesCS7D01G313200.1	Wheat	cytosol, mitochondrion	79.61	80.13
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	79.61	80.13
TraesCS7A01G316200.1	Wheat	cytosol, mitochondrion	79.61	80.13
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	79.61	80.13
TraesCS7B01G217300.1	Wheat	cytosol, mitochondrion	79.61	80.13
TraesCS7B01G217400.1	Wheat	golgi	79.61	80.13
CDY56728	Canola	cytosol, mitochondrion	77.63	74.68
Os08t0117200-00	Rice	nucleus	76.32	73.42
GSMUA_Achr1P16660_001	Banana	plastid	86.18	70.81
KRH07853	Soybean	cytosol	30.26	68.66
TraesCS2A01G184000.1	Wheat	cytosol	67.11	67.55
TraesCS2B01G223400.1	Wheat	cytosol	67.11	67.55
TraesCS2D01G203800.1	Wheat	cytosol	67.11	67.55
Os07t0572900-01	Rice	mitochondrion	66.45	66.89
HORVU7Hr1G075290.2	Barley	plastid	79.61	66.85
HORVU7Hr1G075250.1	Barley	plasma membrane	79.61	65.76
Zm00001d049668_P001	Maize	cytosol, mitochondrion	76.97	63.93
EER97417	Sorghum	cytosol, mitochondrion	63.16	63.58
CDX74728	Canola	endoplasmic reticulum, extracellular	67.11	55.74
Os02t0677800-01	Rice	mitochondrion	31.58	43.64
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	32.24	37.12
HORVU2Hr1G037940.1	Barley	cytosol	29.61	21.33

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	MapMan:17.1.3.1.14	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr6G01570_001	EnsemblPlants:GSMUA_Achr6P01570_001	EnsemblPlants:GSMUA_Achr6T01570_001	UniProt:M0T3A5	HAMAP:MF_01343_A	PFAM:PF00312
PFAM:PF08069	ScanProsite:PS00362	PANTHER:PTHR11885	PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N	InterPro:Ribosomal_S15
InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd	SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060	UniParc:UPI000294A16A

Description

40S ribosomal protein S13 [Source:GMGC_GENE;Acc:GSMUA_Achr6G01570_001]

Coordinates

chr6:+:1021688..1025564

Molecular Weight (calculated)

17103.1 Da

IEP (calculated)

11.053

GRAVY (calculated)

-0.410

Length

152 amino acids

Sequence
(BLAST)

001: MGRMHSRGKG ISSSALPYKR TPPSWLKISA AEVEESICKF SKKGLTPSQI GVILRDSHGI AQVKSVTGNK ILRILKAHGL QPGIPEDLYF LIKKAVAIRK
101: HLERNKKDKD SKFRLILVES RIHRLTRYYK RTKQVPATYK YVSGSAAETM VA

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.