Factsheet for TraesCS2D01G203800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G223400.1	Wheat	cytosol	99.34	99.34
TraesCS2A01G184000.1	Wheat	cytosol	98.68	98.68
Os07t0572900-01	Rice	mitochondrion	79.47	79.47
EER97417	Sorghum	cytosol, mitochondrion	78.15	78.15
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	76.82	76.82
TraesCS7D01G313200.1	Wheat	cytosol, mitochondrion	76.82	76.82
PGSC0003DMT400017986	Potato	mitochondrion	73.51	73.51
Solyc05g051000.2.1	Tomato	nucleus	73.51	73.51
PGSC0003DMT400024801	Potato	mitochondrion	72.85	72.85
PGSC0003DMT400059239	Potato	mitochondrion	72.85	72.85
PGSC0003DMT400066770	Potato	mitochondrion	72.85	72.85
PGSC0003DMT400070434	Potato	mitochondrion	72.85	72.85
Solyc01g091220.2.1	Tomato	mitochondrion	72.85	72.85
CDY57102	Canola	mitochondrion	72.85	72.85
Solyc03g083530.2.1	Tomato	mitochondrion	72.85	72.85
CDY51811	Canola	mitochondrion	72.85	72.85
Solyc10g018250.1.1	Tomato	mitochondrion	72.85	72.85
CDY37034	Canola	mitochondrion	72.85	72.85
Solyc11g072260.1.1	Tomato	nucleus	72.85	72.85
CDX74731	Canola	mitochondrion	72.85	72.85
Bra040316.1-P	Field mustard	mitochondrion	72.85	72.85
VIT_15s0048g00670.t01	Wine grape	mitochondrion	72.85	72.85
Bra004901.1-P	Field mustard	mitochondrion	72.85	72.85
AT4G00100.1	Thale cress	cytosol, mitochondrion	72.19	72.19
AT3G60770.1	Thale cress	cytosol, mitochondrion	72.19	72.19
VIT_16s0022g01590.t01	Wine grape	mitochondrion	71.52	71.52
KRH57298	Soybean	mitochondrion	71.52	71.52
CDY48375	Canola	mitochondrion	71.52	71.52
Bra003427.1-P	Field mustard	mitochondrion	71.52	71.52
Bra007556.1-P	Field mustard	mitochondrion	71.52	71.52
Bra014472.1-P	Field mustard	mitochondrion	71.52	71.52
CDX67841	Canola	extracellular	71.52	71.52
CDX89075	Canola	cytosol, mitochondrion	71.52	71.52
CDY41142	Canola	mitochondrion	71.52	71.52
KRH57296	Soybean	mitochondrion	71.52	71.52
KRH04022	Soybean	nucleus	71.52	71.52
KRH57294	Soybean	mitochondrion	71.52	71.52
CDX71784	Canola	cytosol, mitochondrion	70.86	70.86
GSMUA_Achr6P01570_001	Banana	mitochondrion	67.55	67.11
GSMUA_AchrUn_...	Banana	mitochondrion	66.23	66.23
KRH07853	Soybean	cytosol	27.81	62.69
CDY56728	Canola	cytosol, mitochondrion	65.56	62.66
GSMUA_Achr1P16660_001	Banana	plastid	67.55	55.14
CDX74728	Canola	endoplasmic reticulum, extracellular	60.26	49.73
Solyc12g077580.1.1	Tomato	endoplasmic reticulum, extracellular	29.14	33.33
HORVU2Hr1G037940.1	Barley	cytosol	45.03	32.23

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	MapMan:17.1.3.1.14	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	HAMAP:MF_01343_A
PFAM:PF00312	PFAM:PF08069	ScanProsite:PS00362	PANTHER:PTHR11885	PANTHER:PTHR11885:SF8	InterPro:Ribosomal_S13/S15_N
InterPro:Ribosomal_S15	InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd	SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060
EnsemblPlantsGene:TraesCS2D01G203800	EnsemblPlants:TraesCS2D01G203800.1	TIGR:cd00353	:	:	:

Description

No Description!

Coordinates

chr2D:-:155555999..155556454

Molecular Weight (calculated)

16904.9 Da

IEP (calculated)

11.005

GRAVY (calculated)

-0.271

Length

151 amino acids

Sequence
(BLAST)

001: MGRMHSNGKG MSSSVIPYKR EAPAWVKTSA PDVEEIIVRA AKKGQLPSQI GALLRDGYGI PLSKAVTGAK IVRLLKARGL APEMPEDLYF LIKKAVAIRK
101: HLERNRSDVD AKFRLILVES RVHRLTRYYR LTKKMPAAWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT3G60770.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTP QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13A40S ribosomal protein S13-1 [Source:UniProtKB/Swiss-Prot;Acc:P59223]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.