Factsheet for PGSC0003DMT400017986

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g051000.2.1	Tomato	nucleus	100.0	100.0
PGSC0003DMT400070434	Potato	mitochondrion	99.34	99.34
PGSC0003DMT400066770	Potato	mitochondrion	99.34	99.34
PGSC0003DMT400059239	Potato	mitochondrion	99.34	99.34
PGSC0003DMT400024801	Potato	mitochondrion	99.34	99.34
VIT_15s0048g00670.t01	Wine grape	mitochondrion	95.36	95.36
KRH57298	Soybean	mitochondrion	95.36	95.36
KRH57296	Soybean	mitochondrion	95.36	95.36
KRH57294	Soybean	mitochondrion	95.36	95.36
KRH04022	Soybean	nucleus	95.36	95.36
AT4G00100.1	Thale cress	cytosol, mitochondrion	94.04	94.04
CDY57102	Canola	mitochondrion	94.04	94.04
CDY51811	Canola	mitochondrion	94.04	94.04
CDY37034	Canola	mitochondrion	94.04	94.04
Bra004901.1-P	Field mustard	mitochondrion	94.04	94.04
Bra040316.1-P	Field mustard	mitochondrion	94.04	94.04
AT3G60770.1	Thale cress	cytosol, mitochondrion	94.04	94.04
CDX74731	Canola	mitochondrion	94.04	94.04
CDY48375	Canola	mitochondrion	92.72	92.72
Bra003427.1-P	Field mustard	mitochondrion	92.72	92.72
Bra007556.1-P	Field mustard	mitochondrion	92.72	92.72
Bra014472.1-P	Field mustard	mitochondrion	92.72	92.72
CDY41142	Canola	mitochondrion	92.72	92.72
CDX67841	Canola	extracellular	92.72	92.72
CDX89075	Canola	cytosol, mitochondrion	92.72	92.72
CDX71784	Canola	cytosol, mitochondrion	92.05	92.05
Os08t0117300-01	Rice	nucleus	89.4	89.4
Zm00001d049666_P001	Maize	mitochondrion	88.74	88.74
EES14427	Sorghum	mitochondrion	88.74	88.74
EES14430	Sorghum	mitochondrion	88.08	88.08
TraesCS7D01G313200.1	Wheat	cytosol, mitochondrion	87.42	87.42
Zm00001d035094_P001	Maize	mitochondrion	87.42	87.42
TraesCS7B01G217400.1	Wheat	golgi	87.42	87.42
TraesCS7B01G217300.1	Wheat	cytosol, mitochondrion	87.42	87.42
TraesCS7A01G316800.1	Wheat	cytosol, mitochondrion	87.42	87.42
TraesCS7A01G316200.1	Wheat	cytosol, mitochondrion	87.42	87.42
TraesCS7D01G313300.1	Wheat	cytosol, mitochondrion	87.42	87.42
GSMUA_AchrUn_...	Banana	mitochondrion	85.43	85.43
GSMUA_Achr6P01570_001	Banana	mitochondrion	84.11	83.55
CDY56728	Canola	cytosol, mitochondrion	86.75	82.91
Os08t0117200-00	Rice	nucleus	84.11	80.38
KRH07853	Soybean	cytosol	34.44	77.61
TraesCS2A01G184000.1	Wheat	cytosol	73.51	73.51
TraesCS2B01G223400.1	Wheat	cytosol	73.51	73.51
TraesCS2D01G203800.1	Wheat	cytosol	73.51	73.51
HORVU7Hr1G075290.2	Barley	plastid	87.42	72.93
HORVU7Hr1G075250.1	Barley	plasma membrane	87.42	71.74
GSMUA_Achr1P16660_001	Banana	plastid	86.09	70.27
Os07t0572900-01	Rice	mitochondrion	70.2	70.2
Zm00001d049668_P001	Maize	cytosol, mitochondrion	82.78	68.31
EER97417	Sorghum	cytosol, mitochondrion	68.21	68.21
CDX74728	Canola	endoplasmic reticulum, extracellular	77.48	63.93
Os02t0677800-01	Rice	mitochondrion	31.79	43.64
HORVU2Hr1G037940.1	Barley	cytosol	31.79	22.75

Protein Annotations

Gene3D:1.10.287.10	Gene3D:1.10.8.1030	EntrezGene:102587574	MapMan:17.1.3.1.14	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	UniProt:M1A9V7	HAMAP:MF_01343_A	PFAM:PF00312	PFAM:PF08069	EnsemblPlantsGene:PGSC0003DMG400006991
PGSC:PGSC0003DMG400006991	EnsemblPlants:PGSC0003DMT400017986	ScanProsite:PS00362	PANTHER:PTHR11885	PANTHER:PTHR11885:SF7	InterPro:Ribosomal_S13/S15_N
InterPro:Ribosomal_S15	InterPro:Ribosomal_S15P	InterPro:S15_NS1_RNA-bd	SMART:SM01386	SMART:SM01387	SUPFAM:SSF47060
UniParc:UPI0001BA2298	RefSeq:XP_006345513.1	:	:	:	:

Description

Cytoplasmic ribosomal protein S13 [Source:PGSC_GENE;Acc:PGSC0003DMG400006991]

Coordinates

chr5:-:45564869..45568866

Molecular Weight (calculated)

17050.1 Da

IEP (calculated)

11.074

GRAVY (calculated)

-0.470

Length

151 amino acids

Sequence
(BLAST)

001: MGRMHSRGKG ISASALPYKR TPPSWLKTSA PDVEDNICKF AKKGLTPSQI GVILRDSHGI AQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Best Arabidopsis Sequence Match ( AT4G00100.1 )
(BLAST)

001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A

Arabidopsis Description

RPS13B40S ribosomal protein S13-2 [Source:UniProtKB/Swiss-Prot;Acc:P59224]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.