Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67841 | Canola | extracellular | 67.21 | 81.46 |
| CDX89075 | Canola | cytosol, mitochondrion | 67.21 | 81.46 |
| CDY41142 | Canola | mitochondrion | 67.21 | 81.46 |
| CDY48375 | Canola | mitochondrion | 67.21 | 81.46 |
| CDX71784 | Canola | cytosol, mitochondrion | 66.67 | 80.79 |
| CDY57102 | Canola | mitochondrion | 66.67 | 80.79 |
| CDY51811 | Canola | mitochondrion | 66.67 | 80.79 |
| CDY37034 | Canola | mitochondrion | 66.67 | 80.79 |
| CDX74731 | Canola | mitochondrion | 66.67 | 80.79 |
| KRH07853 | Soybean | cytosol | 28.42 | 77.61 |
| PGSC0003DMT400017986 | Potato | mitochondrion | 63.93 | 77.48 |
| PGSC0003DMT400070434 | Potato | mitochondrion | 63.39 | 76.82 |
| PGSC0003DMT400066770 | Potato | mitochondrion | 63.39 | 76.82 |
| PGSC0003DMT400059239 | Potato | mitochondrion | 63.39 | 76.82 |
| PGSC0003DMT400024801 | Potato | mitochondrion | 63.39 | 76.82 |
| VIT_15s0048g00670.t01 | Wine grape | mitochondrion | 62.84 | 76.16 |
| KRH57298 | Soybean | mitochondrion | 62.84 | 76.16 |
| KRH57296 | Soybean | mitochondrion | 62.84 | 76.16 |
| KRH57294 | Soybean | mitochondrion | 62.84 | 76.16 |
| KRH04022 | Soybean | nucleus | 62.84 | 76.16 |
| VIT_16s0022g01590.t01 | Wine grape | mitochondrion | 61.2 | 74.17 |
| TraesCS7D01G313200.1 | Wheat | cytosol, mitochondrion | 60.11 | 72.85 |
| TraesCS7B01G217400.1 | Wheat | golgi | 60.11 | 72.85 |
| TraesCS7B01G217300.1 | Wheat | cytosol, mitochondrion | 60.11 | 72.85 |
| TraesCS7A01G316800.1 | Wheat | cytosol, mitochondrion | 60.11 | 72.85 |
| TraesCS7A01G316200.1 | Wheat | cytosol, mitochondrion | 60.11 | 72.85 |
| TraesCS7D01G313300.1 | Wheat | cytosol, mitochondrion | 60.11 | 72.85 |
| EES14427 | Sorghum | mitochondrion | 59.56 | 72.19 |
| EES14430 | Sorghum | mitochondrion | 59.56 | 72.19 |
| Os08t0117300-01 | Rice | nucleus | 59.56 | 72.19 |
| Zm00001d035094_P001 | Maize | mitochondrion | 59.56 | 72.19 |
| Zm00001d049666_P001 | Maize | mitochondrion | 59.56 | 72.19 |
| CDY56728 | Canola | cytosol, mitochondrion | 62.3 | 72.15 |
| Os08t0117200-00 | Rice | nucleus | 59.56 | 68.99 |
| GSMUA_Achr6P01570_001 | Banana | mitochondrion | 55.74 | 67.11 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 53.01 | 64.24 |
| HORVU7Hr1G075290.2 | Barley | plastid | 60.11 | 60.77 |
| HORVU7Hr1G075250.1 | Barley | plasma membrane | 60.66 | 60.33 |
| TraesCS2A01G184000.1 | Wheat | cytosol | 49.73 | 60.26 |
| TraesCS2B01G223400.1 | Wheat | cytosol | 49.73 | 60.26 |
| TraesCS2D01G203800.1 | Wheat | cytosol | 49.73 | 60.26 |
| EER97417 | Sorghum | cytosol, mitochondrion | 48.63 | 58.94 |
| Os07t0572900-01 | Rice | mitochondrion | 48.63 | 58.94 |
| Zm00001d049668_P001 | Maize | cytosol, mitochondrion | 54.64 | 54.64 |
| GSMUA_Achr1P16660_001 | Banana | plastid | 55.19 | 54.59 |
| Solyc12g077580.1.1 | Tomato | endoplasmic reticulum, extracellular | 29.51 | 40.91 |
| Os02t0677800-01 | Rice | mitochondrion | 19.13 | 31.82 |
| HORVU2Hr1G037940.1 | Barley | cytosol | 15.85 | 13.74 |
Protein Annotations
| Gene3D:1.10.287.10 | Gene3D:1.10.8.1030 | MapMan:17.1.3.1.14 | GO:A0A078CI81 | EnsemblPlants:CDX74728 | ProteinID:CDX74728 |
| ProteinID:CDX74728.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00116690001 | PFAM:PF00312 | PFAM:PF08069 |
| ScanProsite:PS00362 | PANTHER:PTHR11885 | PANTHER:PTHR11885:SF7 | InterPro:Ribosomal_S13/S15_N | InterPro:Ribosomal_S15 | InterPro:Ribosomal_S15P |
| InterPro:S15_NS1_RNA-bd | SMART:SM01386 | SMART:SM01387 | SUPFAM:SSF47060 | SignalP:SignalP-noTM | UniParc:UPI0004EDBB27 |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g04740D
Coordinates
chrLK031802:-:341060..343838
Molecular Weight (calculated)
21023.6 Da
IEP (calculated)
10.739
GRAVY (calculated)
0.060
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQIFLLLLQ DCQLLLQLIT QASLLVLSKP LKPYLLLLLS LLRELFQTCK LLRLDLINSI LLKQVDESIC KFAKKGLTPS QIGVILRDSH GIPQVKSVTG
101: NKILRILKAH GLAPEIPEDL YHLIKKAVAI RKHLERNRKD KDSKFRLILV ESRIHRLARY YKKTKKLPPV WKYESTTAST LVA
101: NKILRILKAH GLAPEIPEDL YHLIKKAVAI RKHLERNRKD KDSKFRLILV ESRIHRLARY YKKTKKLPPV WKYESTTAST LVA
001: MGRMHSRGKG ISASALPYKR SSPSWLKTTP QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
Arabidopsis Description
RPS13A40S ribosomal protein S13-1 [Source:UniProtKB/Swiss-Prot;Acc:P59223]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.