Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH07853 | Soybean | cytosol | 22.73 | 44.78 |
| Solyc11g072260.1.1 | Tomato | nucleus | 41.67 | 36.42 |
| Solyc10g018250.1.1 | Tomato | mitochondrion | 41.67 | 36.42 |
| Solyc03g083530.2.1 | Tomato | mitochondrion | 41.67 | 36.42 |
| Solyc01g091220.2.1 | Tomato | mitochondrion | 41.67 | 36.42 |
| KRH04022 | Soybean | nucleus | 41.67 | 36.42 |
| KRH57298 | Soybean | mitochondrion | 41.67 | 36.42 |
| KRH57296 | Soybean | mitochondrion | 41.67 | 36.42 |
| KRH57294 | Soybean | mitochondrion | 41.67 | 36.42 |
| Solyc05g051000.2.1 | Tomato | nucleus | 40.91 | 35.76 |
| CDX71784 | Canola | cytosol, mitochondrion | 40.91 | 35.76 |
| TraesCS7B01G217300.1 | Wheat | cytosol, mitochondrion | 40.15 | 35.1 |
| TraesCS7D01G313300.1 | Wheat | cytosol, mitochondrion | 40.15 | 35.1 |
| TraesCS7D01G313200.1 | Wheat | cytosol, mitochondrion | 40.15 | 35.1 |
| AT3G60770.1 | Thale cress | cytosol, mitochondrion | 40.15 | 35.1 |
| TraesCS7B01G217400.1 | Wheat | golgi | 40.15 | 35.1 |
| AT4G00100.1 | Thale cress | cytosol, mitochondrion | 40.15 | 35.1 |
| TraesCS7A01G316800.1 | Wheat | cytosol, mitochondrion | 40.15 | 35.1 |
| TraesCS7A01G316200.1 | Wheat | cytosol, mitochondrion | 40.15 | 35.1 |
| Bra003427.1-P | Field mustard | mitochondrion | 40.15 | 35.1 |
| Bra007556.1-P | Field mustard | mitochondrion | 40.15 | 35.1 |
| Bra014472.1-P | Field mustard | mitochondrion | 40.15 | 35.1 |
| CDX67841 | Canola | extracellular | 40.15 | 35.1 |
| CDY48375 | Canola | mitochondrion | 40.15 | 35.1 |
| CDY41142 | Canola | mitochondrion | 40.15 | 35.1 |
| CDX89075 | Canola | cytosol, mitochondrion | 40.15 | 35.1 |
| Os08t0117300-01 | Rice | nucleus | 39.39 | 34.44 |
| EES14430 | Sorghum | mitochondrion | 38.64 | 33.77 |
| Bra004901.1-P | Field mustard | mitochondrion | 38.64 | 33.77 |
| Bra040316.1-P | Field mustard | mitochondrion | 38.64 | 33.77 |
| CDX74731 | Canola | mitochondrion | 38.64 | 33.77 |
| CDY37034 | Canola | mitochondrion | 38.64 | 33.77 |
| CDY51811 | Canola | mitochondrion | 38.64 | 33.77 |
| CDY57102 | Canola | mitochondrion | 38.64 | 33.77 |
| Zm00001d049666_P001 | Maize | mitochondrion | 38.64 | 33.77 |
| Zm00001d035094_P001 | Maize | mitochondrion | 38.64 | 33.77 |
| EES14427 | Sorghum | mitochondrion | 38.64 | 33.77 |
| Os08t0117200-00 | Rice | nucleus | 39.39 | 32.91 |
| CDY56728 | Canola | cytosol, mitochondrion | 39.39 | 32.91 |
| GSMUA_Achr6P01570_001 | Banana | mitochondrion | 37.12 | 32.24 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 36.36 | 31.79 |
| CDX74728 | Canola | endoplasmic reticulum, extracellular | 40.91 | 29.51 |
| HORVU7Hr1G075290.2 | Barley | plastid | 40.15 | 29.28 |
| TraesCS2D01G203800.1 | Wheat | cytosol | 33.33 | 29.14 |
| TraesCS2B01G223400.1 | Wheat | cytosol | 33.33 | 29.14 |
| TraesCS2A01G184000.1 | Wheat | cytosol | 33.33 | 29.14 |
| Os07t0572900-01 | Rice | mitochondrion | 33.33 | 29.14 |
| HORVU7Hr1G075250.1 | Barley | plasma membrane | 40.15 | 28.8 |
| GSMUA_Achr1P16660_001 | Banana | plastid | 39.39 | 28.11 |
| EER97417 | Sorghum | cytosol, mitochondrion | 31.82 | 27.81 |
| Zm00001d049668_P001 | Maize | cytosol, mitochondrion | 37.12 | 26.78 |
| Os02t0677800-01 | Rice | mitochondrion | 13.64 | 16.36 |
| HORVU2Hr1G037940.1 | Barley | cytosol | 5.3 | 3.32 |
Protein Annotations
| Gene3D:1.10.287.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 |
| GO:GO:0022627 | GO:GO:0030529 | GO:GO:0070181 | UniProt:K4DGH8 | PFAM:PF00312 | PFscan:PS51257 |
| PANTHER:PTHR11885 | PANTHER:PTHR11885:SF13 | InterPro:Ribosomal_S15 | InterPro:Ribosomal_S15P | InterPro:S15_NS1_RNA-bd | SUPFAM:SSF47060 |
| EnsemblPlantsGene:Solyc12g077580.1 | EnsemblPlants:Solyc12g077580.1.1 | TMHMM:TMhelix | UniParc:UPI000276A820 | : | : |
Description
No Description!
Coordinates
chr12:+:21283535..21288600
Molecular Weight (calculated)
15181.9 Da
IEP (calculated)
9.980
GRAVY (calculated)
0.411
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKSLVYGL PLVTMLISLA CSFSCNMLSL VINISLLIAW IIFAFGSVFR ITGACFVSHI FFHRNFMSVT DSKIFRNLKA HGLACEISED LYHLSKKVVA
101: NRKRLETKNK DKDSKFRFIL VESRIHRFCS LL
101: NRKRLETKNK DKDSKFRFIL VESRIHRFCS LL
001: MGRMHSRGKG ISASALPYKR SSPSWLKTTP QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
Arabidopsis Description
RPS13A40S ribosomal protein S13-1 [Source:UniProtKB/Swiss-Prot;Acc:P59223]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.