CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015036.1-P	Field mustard	cytosol	95.25	99.13
CDX77428	Canola	cytosol	94.69	98.55
CDX94818	Canola	cytosol	87.43	92.88
CDY47175	Canola	cytosol	85.2	89.18
CDY67342	Canola	cytosol	84.08	88.27
CDX93010	Canola	cytosol	86.59	87.82
AT3G24350.2	Thale cress	cytosol	78.21	77.56
VIT_11s0016g04370.t01	Wine grape	plastid	66.76	70.71
KRH61871	Soybean	endoplasmic reticulum	64.8	68.84
KRH52536	Soybean	endoplasmic reticulum	64.8	68.44
KRH61874	Soybean	endoplasmic reticulum	64.53	68.14
KRH52535	Soybean	cytosol, plastid	63.13	67.26
Solyc08g067910.2.1	Tomato	plastid	62.29	65.4
PGSC0003DMT400037606	Potato	cytosol, plastid	61.17	64.41
GSMUA_Achr10P...	Banana	cytosol	58.94	61.52
CDX70131	Canola	cytosol	10.89	60.94
PGSC0003DMT400011584	Potato	cytosol, plastid	58.66	59.66
GSMUA_Achr7P08550_001	Banana	cytosol	56.15	58.77
GSMUA_Achr6P04790_001	Banana	cytosol	55.59	58.36
TraesCS3B01G138100.1	Wheat	plastid	53.63	56.14
HORVU3Hr1G022030.2	Barley	plastid	53.63	56.14
Os01t0179200-01	Rice	plasma membrane	53.91	56.1
TraesCS3A01G119100.1	Wheat	plastid	53.63	55.98
TraesCS3D01G121000.2	Wheat	plastid	53.07	55.39
Zm00001d039614_P001	Maize	plasma membrane	53.07	55.39
EES02357	Sorghum	plastid	52.23	55.0
Zm00001d008758_P001	Maize	plasma membrane	52.51	54.65
CDY14956	Canola	cytosol	16.2	52.25
CDY11339	Canola	cytosol, plastid	43.3	45.59
CDX80972	Canola	plastid	43.02	45.16

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.3	GO:A0A078JJ00	UniProt:A0A078JJ00	EnsemblPlants:CDY66440	ProteinID:CDY66440
ProteinID:CDY66440.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00053626001
InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206
SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0004EEDABF	SEG:seg	:	:	:	:

Description

BnaCnng50850DBnaCnng50850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJ00]

Coordinates

chrLK035265:-:3522..5524

Molecular Weight (calculated)

40132.4 Da

IEP (calculated)

9.895

GRAVY (calculated)

-0.512

Length

358 amino acids

Sequence
(BLAST)

001: MQARRGQSSY RDRTDEFFGI VETLRRSTAP DAANNVPYGG GGGGRREDPR SAVANQSEFK KRAAVIGLAI NQTSQKLSKL AQRVRTIVSE DVISLAKRSS
101: VFDDPTREIQ ELTAVIKQEI SSLNSALIDL QAVRNSHNDE RTISRDTTTH SATVVDDLKN RLMDTTKEFK DVLTLRTENM KIHEIRRQRF TSNPSKESTN
201: PFVRQRPLAS KPAATQPAPL PWASSSSSSS SSSQLVPRRQ GEAESSPLLQ QSQQQQQQQQ MVPLQDTYME SRAEALHNVE STIHELSNIF TQLATMVSQQ
301: GEIAIRIDQN MEDTLANVEG AQSQLARYLN SISSNRWLMI KIFFVLIAFL MVFLFFVA

Best Arabidopsis Sequence Match ( AT3G24350.2 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KRIRMVLRSR TDLFSVAKRT
101: SVFDDPTQEI QELTVVIKQE ISALNSALVD LQLFRSSQND EGNNSRDRDK STHSATVVDD LKYRLMDTTK EFKDVLTMRT ENMKVHESRR QLFSSNASKE
201: STNPFVRQRP LAAKAAASES VPLPWANGSS SSSSQLVPWK PGEGESSPLL QQSQQQQQQQ QQQMVPLQDT YMQGRAEALH TVESTIHELS SIFTQLATMV
301: SQQGEIAIRI DQNMEDTLAN VEGAQSQLAR YLNSISSNRW LMMKIFFVLI AFLMIFLFFV A

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.