CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47175	Canola	cytosol	97.95	97.66
Bra028370.1-P	Field mustard	cytosol	83.28	95.62
CDX94818	Canola	cytosol	88.56	89.61
CDX77428	Canola	cytosol	87.68	86.92
CDX93010	Canola	cytosol	87.68	84.7
CDY66440	Canola	cytosol	88.27	84.08
AT3G24350.2	Thale cress	cytosol	78.89	74.52
KRH52536	Soybean	endoplasmic reticulum	68.33	68.73
KRH61874	Soybean	endoplasmic reticulum	68.04	68.44
VIT_11s0016g04370.t01	Wine grape	plastid	67.74	68.34
KRH61871	Soybean	endoplasmic reticulum	67.16	67.95
KRH52535	Soybean	cytosol, plastid	65.98	66.96
Solyc08g067910.2.1	Tomato	plastid	64.22	64.22
PGSC0003DMT400037606	Potato	cytosol, plastid	63.34	63.53
GSMUA_Achr10P...	Banana	cytosol	61.29	60.93
CDX70131	Canola	cytosol	11.14	59.38
GSMUA_Achr7P08550_001	Banana	cytosol	58.94	58.77
PGSC0003DMT400011584	Potato	cytosol, plastid	60.41	58.52
GSMUA_Achr6P04790_001	Banana	cytosol	56.89	56.89
Os01t0179200-01	Rice	plasma membrane	55.13	54.65
HORVU3Hr1G022030.2	Barley	plastid	54.55	54.39
TraesCS3B01G138100.1	Wheat	plastid	54.55	54.39
TraesCS3A01G119100.1	Wheat	plastid	54.55	54.23
TraesCS3D01G121000.2	Wheat	plastid	53.96	53.64
EES02357	Sorghum	plastid	52.79	52.94
Zm00001d008758_P001	Maize	plasma membrane	53.37	52.91
Zm00001d039614_P001	Maize	plasma membrane	53.08	52.77
CDY14956	Canola	cytosol	16.42	50.45
CDY11339	Canola	cytosol, plastid	44.87	45.0
CDX80972	Canola	plastid	44.87	44.87

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.3	GO:A0A078JPP5	UniProt:A0A078JPP5	EnsemblPlants:CDY67342	ProteinID:CDY67342
ProteinID:CDY67342.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00062767001
InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206
SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0004EE7939	SEG:seg	:	:	:	:

Description

BnaCnng54570DBnaCnng54570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPP5]

Coordinates

chrLK035998:+:6339..8365

Molecular Weight (calculated)

38213.2 Da

IEP (calculated)

9.373

GRAVY (calculated)

-0.506

Length

341 amino acids

Sequence
(BLAST)

001: MQARHGQSSY RDRTDEFFGI VESRRRSIAP AAENNVPYGG GGRRREDPRS AAANQSEFSK RASLIGLAIH QTSQKLSKLA QLAKRSSVFD DPTREIQELT
101: VVIKQEISGL NGALLDLQAV RNSHNDESNI SRDTTTHSAT VVDDLKNRLM DTTKEFKDVL TLRTENMKIQ EDRMKFFSKI SSKESANPFV RQRPLASKPS
201: PSQPAPLPWA NGSSSSSSQI VPSRQGEAES SPLLQQSQQQ QQHMVPLQDT YMQSRAEALH NVESTIHELG NIFTQLATMV SQQGEIAIRI DQNMEDTLAN
301: VEGAQTQLAR YLNSISSNRW LMIKIFFVLI AFLMVFLFFV A

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.