CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94818	Canola	cytosol	92.92	97.33
CDX77428	Canola	cytosol	88.39	90.7
Bra001945.1-P	Field mustard	cytosol	94.05	90.46
CDY47175	Canola	cytosol	86.12	88.89
CDY67342	Canola	cytosol	84.7	87.68
CDY66440	Canola	cytosol	87.82	86.59
AT3G24350.2	Thale cress	cytosol	76.77	75.07
VIT_11s0016g04370.t01	Wine grape	plastid	67.42	70.41
KRH61871	Soybean	endoplasmic reticulum	66.01	69.14
KRH52536	Soybean	endoplasmic reticulum	66.29	69.03
KRH61874	Soybean	endoplasmic reticulum	66.01	68.73
KRH52535	Soybean	cytosol, plastid	64.59	67.86
Solyc08g067910.2.1	Tomato	plastid	63.46	65.69
PGSC0003DMT400037606	Potato	cytosol, plastid	62.61	65.0
GSMUA_Achr10P...	Banana	cytosol	59.77	61.52
CDX70131	Canola	cytosol	11.05	60.94
PGSC0003DMT400011584	Potato	cytosol, plastid	59.77	59.94
GSMUA_Achr7P08550_001	Banana	cytosol	57.79	59.65
GSMUA_Achr6P04790_001	Banana	cytosol	56.37	58.36
TraesCS3B01G138100.1	Wheat	plastid	55.81	57.6
HORVU3Hr1G022030.2	Barley	plastid	55.81	57.6
TraesCS3A01G119100.1	Wheat	plastid	55.81	57.43
Os01t0179200-01	Rice	plasma membrane	55.52	56.98
TraesCS3D01G121000.2	Wheat	plastid	55.24	56.85
EES02357	Sorghum	plastid	53.82	55.88
Zm00001d039614_P001	Maize	plasma membrane	54.11	55.69
Zm00001d008758_P001	Maize	plasma membrane	54.11	55.52
CDY14956	Canola	cytosol	16.43	52.25
CDY11339	Canola	cytosol, plastid	43.91	45.59
CDX80972	Canola	plastid	43.91	45.45

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.3	GO:A0A078DUI6	EnsemblPlants:CDX93010	ProteinID:CDX93010	ProteinID:CDX93010.1
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192
GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00154898001	InterPro:IPR000727	PFAM:PF05739	PFAM:PF11416	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin-5_N	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EEAB0B	SEG:seg

Description

BnaA03g37320D

Coordinates

chrLK031874:+:679615..681564

Molecular Weight (calculated)

39788.3 Da

IEP (calculated)

10.234

GRAVY (calculated)

-0.476

Length

353 amino acids

Sequence
(BLAST)

001: MQARHVHSSY RDRTNEFFGV VETLRRSIAP AANNVPYGGG RREDPRSAAV MQSEFNRRAS VIGLAIHQTS QKLSKLAQRK IKTVVYFTLG LSSLAKRSSV
101: FDDPTREIGE LTAVIKQEIS GLNTALIDLQ AVRNSHNDER NISRDTTTHS ATVVDDLKNR LMDTTKEFKD VLTLRTENMK IHENRRQRFT NNPSKESTNP
201: FVRQRPLASK PAPSQPAPLP WANGSSSSSS QLVPRKQGEA ESSPLLQQSQ QQQQQMVPLQ DTYMESRAEA LHNVESTIHE LSNIFTQLAT MVSQQGEIAI
301: RIDQNMEDTL ANVEGAQSQL ARYLNSISSN RWLMIKIFFV LIAFLMVFLF FVA

Best Arabidopsis Sequence Match ( AT3G24350.2 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KRIRMVLRSR TDLFSVAKRT
101: SVFDDPTQEI QELTVVIKQE ISALNSALVD LQLFRSSQND EGNNSRDRDK STHSATVVDD LKYRLMDTTK EFKDVLTMRT ENMKVHESRR QLFSSNASKE
201: STNPFVRQRP LAAKAAASES VPLPWANGSS SSSSQLVPWK PGEGESSPLL QQSQQQQQQQ QQQMVPLQDT YMQGRAEALH TVESTIHELS SIFTQLATMV
301: SQQGEIAIRI DQNMEDTLAN VEGAQSQLAR YLNSISSNRW LMMKIFFVLI AFLMIFLFFV A

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.