CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015036.1-P	Field mustard	cytosol	99.42	99.42
CDY66440	Canola	cytosol	98.55	94.69
CDX94818	Canola	cytosol	90.7	92.58
CDY47175	Canola	cytosol	88.08	88.6
CDX93010	Canola	cytosol	90.7	88.39
CDY67342	Canola	cytosol	86.92	87.68
AT3G24350.2	Thale cress	cytosol	79.65	75.9
VIT_11s0016g04370.t01	Wine grape	plastid	69.19	70.41
KRH61871	Soybean	endoplasmic reticulum	66.86	68.25
KRH52536	Soybean	endoplasmic reticulum	66.86	67.85
KRH61874	Soybean	endoplasmic reticulum	66.57	67.55
KRH52535	Soybean	cytosol, plastid	65.12	66.67
Solyc08g067910.2.1	Tomato	plastid	63.66	64.22
PGSC0003DMT400037606	Potato	cytosol, plastid	62.79	63.53
GSMUA_Achr10P...	Banana	cytosol	61.34	61.52
CDX70131	Canola	cytosol	11.34	60.94
PGSC0003DMT400011584	Potato	cytosol, plastid	60.17	58.81
GSMUA_Achr7P08550_001	Banana	cytosol	58.43	58.77
GSMUA_Achr6P04790_001	Banana	cytosol	57.85	58.36
TraesCS3B01G138100.1	Wheat	plastid	55.52	55.85
HORVU3Hr1G022030.2	Barley	plastid	55.52	55.85
Os01t0179200-01	Rice	plasma membrane	55.81	55.81
TraesCS3A01G119100.1	Wheat	plastid	55.52	55.69
TraesCS3D01G121000.2	Wheat	plastid	54.94	55.1
Zm00001d039614_P001	Maize	plasma membrane	54.94	55.1
EES02357	Sorghum	plastid	54.07	54.71
Zm00001d008758_P001	Maize	plasma membrane	54.36	54.36
CDY14956	Canola	cytosol	16.86	52.25
CDY11339	Canola	cytosol, plastid	44.77	45.29
CDX80972	Canola	plastid	44.48	44.87

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.3	GO:A0A078CQM4	EnsemblPlants:CDX77428	ProteinID:CDX77428	ProteinID:CDX77428.1
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192
GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00128278001	InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EE1B81	SEG:seg	:	:

Description

BnaA07g05660D

Coordinates

chrLK031811:-:538212..540217

Molecular Weight (calculated)

38532.6 Da

IEP (calculated)

9.896

GRAVY (calculated)

-0.507

Length

344 amino acids

Sequence
(BLAST)

001: MQARRGQSSY RDRADEFFGI VETLRRSIAP DAANNVPYGG GGGGRREDPR SAVANQSEFK KRAAVIGLAI NQTSQKLSKL AQLAKRSSVF DDPTREIQEL
101: TAVIKQEISS LNSALIDLQA VRNSHNDERT ISRDTTTHSA TVVDDLKNRL MDTTKEFKDV LTLRTENMKI HEIRRQRFTS NPSKESTNPF VRQRPLASKP
201: ATTQPAPLPW ASSSSSSSSS SQLVPRRQGE AESSPLLQQS QQQQQQMVPL QDTYMESRAE ALHNVESTIH ELSNIFTQLA TMVSQQGEIA IRIDQNMEDT
301: LANVEGAQSQ LARYLNSISS NRWLMIKIFF VLIAFLMVFL FFVA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.