Factsheet for PGSC0003DMT400037606

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, golgi, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g067910.2.1	Tomato	plastid	97.35	97.07
PGSC0003DMT400011584	Potato	cytosol, plastid	95.59	92.33
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	82.06	82.06
KRH61874	Soybean	endoplasmic reticulum	80.59	80.83
KRH52536	Soybean	endoplasmic reticulum	80.29	80.53
KRH61871	Soybean	endoplasmic reticulum	79.41	80.12
KRH52535	Soybean	cytosol, plastid	79.12	80.06
GSMUA_Achr7P08550_001	Banana	cytosol	66.47	66.08
CDX94818	Canola	cytosol	65.0	65.58
GSMUA_Achr10P...	Banana	cytosol	65.59	65.01
GSMUA_Achr6P04790_001	Banana	cytosol	64.12	63.93
Bra015036.1-P	Field mustard	cytosol	64.12	63.37
CDY67342	Canola	cytosol	63.53	63.34
CDY47175	Canola	cytosol	63.53	63.16
CDX77428	Canola	cytosol	63.53	62.79
Zm00001d039614_P001	Maize	plasma membrane	63.24	62.68
EES02357	Sorghum	plastid	62.65	62.65
CDX93010	Canola	cytosol	65.0	62.61
Os01t0179200-01	Rice	plasma membrane	63.24	62.5
AT3G24350.2	Thale cress	cytosol	65.29	61.5
Zm00001d008758_P001	Maize	plasma membrane	62.06	61.34
TraesCS3A01G119100.1	Wheat	plastid	61.76	61.22
CDY66440	Canola	cytosol	64.41	61.17
HORVU3Hr1G022030.2	Barley	plastid	61.47	61.11
TraesCS3B01G138100.1	Wheat	plastid	61.47	61.11
TraesCS3D01G121000.2	Wheat	plastid	61.47	60.93
Bra001945.1-P	Field mustard	cytosol	65.29	60.49
Bra028370.1-P	Field mustard	cytosol	50.88	58.25
PGSC0003DMT400047329	Potato	cytosol, plastid	48.82	49.55

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102584200	MapMan:22.7.1.3	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR000727	UniProt:M1B5L7	PFAM:PF05739
PFAM:PF11416	EnsemblPlantsGene:PGSC0003DMG400014503	PGSC:PGSC0003DMG400014503	EnsemblPlants:PGSC0003DMT400037606	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-5_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI0002951597	RefSeq:XP_006356624.1	SEG:seg	:	:

Description

Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400014503]

Coordinates

chr8:-:42590798..42598835

Molecular Weight (calculated)

37997.8 Da

IEP (calculated)

9.457

GRAVY (calculated)

-0.492

Length

340 amino acids

Sequence
(BLAST)

001: MPVKVASASL RDRTQEFQSI AERLKKSFSS VQNGPISSST SSGSRSEEQR TTIAMQSEFN RRASKIGFGI HQTSQKLAKL AKLAKRTSVF DDPTTEIQEL
101: TAVIKQDITA LNSAVVDLQL HSNARNESGN SDTTSHSTTV VDDLKNRLMT ATKEFKEVLT MRTENMKVHE NRRQMFSSST TKEASNPFMR QRPLASRNTA
201: STSASPPPWA NDSPSSSQLF PRKQGDGNTQ PLLQDQQQQQ QQIVPLQDSY MQSRAEAFQN AESTIHELGS IFNQLATLVS EQGEVAIRID ENMDDTLTNV
301: EGAQGALLKY LNSISSNRWL MIKIFFVLIF FLMIFLFFVA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.