Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94818 | Canola | cytosol | 75.35 | 80.71 |
| Bra015036.1-P | Field mustard | cytosol | 76.18 | 79.94 |
| CDX77428 | Canola | cytosol | 75.9 | 79.65 |
| CDY47175 | Canola | cytosol | 75.07 | 79.24 |
| CDY67342 | Canola | cytosol | 74.52 | 78.89 |
| CDY66440 | Canola | cytosol | 77.56 | 78.21 |
| CDX93010 | Canola | cytosol | 75.07 | 76.77 |
| Bra001945.1-P | Field mustard | cytosol | 76.73 | 75.48 |
| Bra028370.1-P | Field mustard | cytosol | 61.22 | 74.41 |
| VIT_11s0016g04370.t01 | Wine grape | plastid | 67.59 | 72.19 |
| KRH61874 | Soybean | endoplasmic reticulum | 66.76 | 71.09 |
| KRH52536 | Soybean | endoplasmic reticulum | 65.93 | 70.21 |
| KRH61871 | Soybean | endoplasmic reticulum | 64.82 | 69.44 |
| KRH52535 | Soybean | cytosol, plastid | 63.99 | 68.75 |
| Solyc08g067910.2.1 | Tomato | plastid | 62.6 | 66.28 |
| PGSC0003DMT400037606 | Potato | cytosol, plastid | 61.5 | 65.29 |
| GSMUA_Achr10P... | Banana | cytosol | 58.73 | 61.81 |
| PGSC0003DMT400011584 | Potato | cytosol, plastid | 58.73 | 60.23 |
| GSMUA_Achr7P08550_001 | Banana | cytosol | 56.51 | 59.65 |
| GSMUA_Achr6P04790_001 | Banana | cytosol | 55.68 | 58.94 |
| Zm00001d039614_P001 | Maize | plasma membrane | 54.02 | 56.85 |
| Os01t0179200-01 | Rice | plasma membrane | 53.74 | 56.4 |
| EES02357 | Sorghum | plastid | 52.63 | 55.88 |
| HORVU3Hr1G022030.2 | Barley | plastid | 52.63 | 55.56 |
| TraesCS3B01G138100.1 | Wheat | plastid | 52.63 | 55.56 |
| Zm00001d008758_P001 | Maize | plasma membrane | 52.91 | 55.52 |
| TraesCS3A01G119100.1 | Wheat | plastid | 52.63 | 55.39 |
| TraesCS3D01G121000.2 | Wheat | plastid | 52.63 | 55.39 |
| AT5G05760.1 | Thale cress | cytosol | 42.66 | 45.83 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.1.3 | EntrezGene:822024 | ProteinID:AEE76892.1 | ProteinID:AEE76893.1 | ArrayExpress:AT3G24350 |
| EnsemblPlantsGene:AT3G24350 | RefSeq:AT3G24350 | TAIR:AT3G24350 | RefSeq:AT3G24350-TAIR-G | EnsemblPlants:AT3G24350.2 | TAIR:AT3G24350.2 |
| Unigene:At.37543 | ProteinID:BAB02935.1 | EMBL:BT004300 | EMBL:BT008604 | UniProt:F4J6K6 | GO:GO:0000139 |
| GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0006888 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 | GO:GO:0061025 |
| InterPro:IPR000727 | RefSeq:NP_001189961.1 | RefSeq:NP_189078.2 | ProteinID:OAP03471.1 | PFAM:PF05739 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF206 |
| SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 | Symbol:SYP32 | InterPro:Syntaxin/epimorphin_CS | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI0001E92EBD | SEG:seg | : | : | : |
Description
SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
Coordinates
chr3:+:8837608..8839702
Molecular Weight (calculated)
40839.4 Da
IEP (calculated)
9.921
GRAVY (calculated)
-0.532
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KRIRMVLRSR TDLFSVAKRT
101: SVFDDPTQEI QELTVVIKQE ISALNSALVD LQLFRSSQND EGNNSRDRDK STHSATVVDD LKYRLMDTTK EFKDVLTMRT ENMKVHESRR QLFSSNASKE
201: STNPFVRQRP LAAKAAASES VPLPWANGSS SSSSQLVPWK PGEGESSPLL QQSQQQQQQQ QQQMVPLQDT YMQGRAEALH TVESTIHELS SIFTQLATMV
301: SQQGEIAIRI DQNMEDTLAN VEGAQSQLAR YLNSISSNRW LMMKIFFVLI AFLMIFLFFV A
101: SVFDDPTQEI QELTVVIKQE ISALNSALVD LQLFRSSQND EGNNSRDRDK STHSATVVDD LKYRLMDTTK EFKDVLTMRT ENMKVHESRR QLFSSNASKE
201: STNPFVRQRP LAAKAAASES VPLPWANGSS SSSSQLVPWK PGEGESSPLL QQSQQQQQQQ QQQMVPLQDT YMQGRAEALH TVESTIHELS SIFTQLATMV
301: SQQGEIAIRI DQNMEDTLAN VEGAQSQLAR YLNSISSNRW LMMKIFFVLI AFLMIFLFFV A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.