Factsheet for HORVU3Hr1G022030.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G138100.1	Wheat	plastid	99.71	99.71
TraesCS3A01G119100.1	Wheat	plastid	98.83	98.54
TraesCS3D01G121000.2	Wheat	plastid	98.25	97.96
Os01t0179200-01	Rice	plasma membrane	87.13	86.63
Zm00001d008758_P001	Maize	plasma membrane	86.84	86.34
EES02357	Sorghum	plastid	85.67	86.18
Zm00001d039614_P001	Maize	plasma membrane	86.26	86.01
GSMUA_Achr7P08550_001	Banana	cytosol	73.98	73.98
GSMUA_Achr6P04790_001	Banana	cytosol	71.64	71.85
GSMUA_Achr10P...	Banana	cytosol	71.64	71.43
VIT_11s0016g04370.t01	Wine grape	plastid	63.74	64.5
KRH52535	Soybean	cytosol, plastid	62.87	63.99
KRH61871	Soybean	endoplasmic reticulum	62.87	63.8
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	62.87	63.24
KRH52536	Soybean	endoplasmic reticulum	62.57	63.13
Solyc08g067910.2.1	Tomato	plastid	61.99	62.17
KRH61874	Soybean	endoplasmic reticulum	61.4	61.95
PGSC0003DMT400037606	Potato	cytosol, plastid	61.11	61.47
PGSC0003DMT400011584	Potato	cytosol, plastid	60.23	58.52
CDX94818	Canola	cytosol	57.31	58.16
Bra015036.1-P	Field mustard	cytosol	56.14	55.81
CDX93010	Canola	cytosol	57.6	55.81
CDX77428	Canola	cytosol	55.85	55.52
CDY47175	Canola	cytosol	55.26	55.26
CDY67342	Canola	cytosol	54.39	54.55
Bra028370.1-P	Field mustard	cytosol	47.37	54.55
CDY66440	Canola	cytosol	56.14	53.63
Bra001945.1-P	Field mustard	cytosol	57.02	53.13
AT3G24350.2	Thale cress	cytosol	55.56	52.63

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.3	EMBL:AK370269	ncoils:Coil	UniProt:F2E298	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	EnsemblPlantsGene:HORVU3Hr1G022030	EnsemblPlants:HORVU3Hr1G022030.2	InterPro:IPR000727
PFAM:PF00804	PFAM:PF05739	PFAM:PF11416	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-5_N	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00020078CC	SEG:seg	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E298]

Coordinates

chrchr3H:-:76091647..76095793

Molecular Weight (calculated)

37598.5 Da

IEP (calculated)

9.768

GRAVY (calculated)

-0.393

Length

342 amino acids

Sequence
(BLAST)

001: MNPSRSAPAS FRDRTNEFRS AVESARRHVA PSPAAASASG SAGPLDDSRS AASAHSEFNR RASKIGLGIH QTSQKLARLA KLAKKTSVFD DPTLEIQELT
101: AVVKKDIGAL NNAVMDLQVL CNSQNESGNL SKDTTNHSTT VVDNLKNRLM SATKEFKEVL TMRTENLKVH ENRRQMFSSS AAKDASNPFI RQRPLVPREA
201: SDAAPPAPWA SDSATTPLFQ RKKTNGDHGA SSSSSSPAFM QQQQLAVQQD SYMQSRAEAL QNVESTIHEL SNIFTQLATM VSQQGELAIR IDENMEETVA
301: NVEGAQGQLL KYLNSISSNR WLMMKIFFVL MVFLMIFIFF VA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.