Factsheet for VIT_11s0016g04370.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	81.07	80.59
GSMUA_Achr7P08550_001	Banana	cytosol	71.89	71.05
Bra015036.1-P	Field mustard	cytosol	71.01	69.77
CDX94818	Canola	cytosol	69.53	69.73
GSMUA_Achr10P...	Banana	cytosol	70.41	69.39
CDX77428	Canola	cytosol	70.41	69.19
CDY47175	Canola	cytosol	69.23	68.42
CDY67342	Canola	cytosol	68.34	67.74
AT3G24350.2	Thale cress	cytosol	72.19	67.59
CDX93010	Canola	cytosol	70.41	67.42
CDY66440	Canola	cytosol	70.71	66.76
GSMUA_Achr6P04790_001	Banana	cytosol	66.86	66.28
Zm00001d008758_P001	Maize	plasma membrane	66.57	65.41
Zm00001d039614_P001	Maize	plasma membrane	66.27	65.31
Bra001945.1-P	Field mustard	cytosol	70.41	64.85
Os01t0179200-01	Rice	plasma membrane	65.68	64.53
EES02357	Sorghum	plastid	64.5	64.12
HORVU3Hr1G022030.2	Barley	plastid	64.5	63.74
TraesCS3B01G138100.1	Wheat	plastid	64.5	63.74
TraesCS3A01G119100.1	Wheat	plastid	64.5	63.56
TraesCS3D01G121000.2	Wheat	plastid	64.5	63.56
Bra028370.1-P	Field mustard	cytosol	55.33	62.96
VIT_13s0067g00280.t01	Wine grape	plastid	52.96	45.32

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100250972	wikigene:100250972	MapMan:22.7.1.3	EMBL:AM432104	ProteinID:CAN80309
ProteinID:CAN80309.1	ProteinID:CBI28114	ProteinID:CBI28114.3	UniProt:D7TBS9	EMBL:FN595756	GO:GO:0000139
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886
GO:GO:0006888	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	GO:GO:0061025	InterPro:IPR000727
EntrezGene:LOC100250972	wikigene:LOC100250972	PFAM:PF05739	PFAM:PF11416	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-5_N
InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00015C8720	ArrayExpress:VIT_11s0016g04370	EnsemblPlantsGene:VIT_11s0016g04370
EnsemblPlants:VIT_11s0016g04370.t01	unigene:Vvi.19053	RefSeq:XP_002284775	RefSeq:XP_002284775.1	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:3667439..3671822

Molecular Weight (calculated)

37620.7 Da

IEP (calculated)

9.612

GRAVY (calculated)

-0.389

Length

338 amino acids

Sequence
(BLAST)

001: MSMKSAQSSY RDRTQEFLNV AERLKKSFSS AAPNAVTSSG AKPDGTRSSL AIQKEFKDRA SRIGYGIHQT SQKLAKLAKL AKRTSVFDDP TMEIQELTAV
101: VKQDITALNA AVVDLQLLCN SQNESGNISS DTTSHSTTVV DDLKNRLMSA TKEFKDVLTM RTENLKVHEN RRQLFSSTAS KESTNPFVRQ RPLAAKSTAT
201: ASSSPPPWAN ESSSSSPLFP RKQGNVESQP LLQQQQQQQQ LVPLQDSYMQ SRAEALQNVE STIHELSNIF TQLATMVSQQ GELAIRIDEN MEDTLANVEG
301: AQGQLVRYLN SISSNRWLMI KIFFVLIVFL MIFLFFVA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.