Factsheet for Bra039375.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra012880.1-P
Bra013361.1-P
Bra030034.1-P
Bra032817.1-P
Bra036850.1-P
Bra041043.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13175.1	Bra030034.1-P	AT1G27300.1	21798944
AT3G13175.1	Bra032817.1-P	AT1G27300.1	21798944
AT3G13175.1	Bra041043.1-P	AT2G20130.1	21798944
AT3G13175.1	Bra012880.1-P	AT3G50910.1	21798944
AT3G13175.1	Bra036850.1-P	AT3G50910.1	21798944
AT3G13175.1	Bra012567.1-P	AT4G19030.1	21798944
AT3G13175.1	Bra013361.1-P	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43365	Canola	extracellular, plasma membrane, vacuole	99.06	99.06
AT3G13175.1	Thale cress	extracellular	78.3	78.3
Bra034700.1-P	Field mustard	extracellular	77.36	78.1
KRH73903	Soybean	endoplasmic reticulum, plasma membrane	43.4	48.94
KRH46356	Soybean	extracellular, plasma membrane	40.57	44.33
KRG98516	Soybean	extracellular	39.62	43.3
VIT_19s0015g00340.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	47.17	42.02
Bra012723.1-P	Field mustard	extracellular	31.13	38.82
Bra038456.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	32.08	38.64
Bra040577.1-P	Field mustard	cytosol	33.02	17.59

Protein Annotations

EnsemblPlants:Bra039375.1	EnsemblPlants:Bra039375.1-P	EnsemblPlantsGene:Bra039375	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR34125	SEG:seg	TMHMM:TMhelix	UniParc:UPI000253E934	UniProt:M4FE54	MapMan:35.2

Description

AT3G13175 (E=1e-026) | unknown protein

Coordinates

chrScaffold000164:-:181334..181654

Molecular Weight (calculated)

11789.3 Da

IEP (calculated)

4.179

GRAVY (calculated)

0.747

Length

106 amino acids

Sequence
(BLAST)

001: MEFREKLLQF KFHIVFAFLF SLLIAALVTF SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPTSSTI SSDGSGVKLA AEGILDYVVG GQEEEIDLLD
101: SFTKLD

Best Arabidopsis Sequence Match ( AT3G13175.1 )
(BLAST)

001: MEFREKLLKF KLQIVFAFVL SLLTVALVAY SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPVSSTI IPGEGAGLKV AAEGILDYVV GGQHEDILFD
101: SFTKLD

Arabidopsis Description

At3g13171 [Source:UniProtKB/TrEMBL;Acc:Q9LK55]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.