Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G12880.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT5G12880.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT5G12880.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT5G12880.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT5G12880.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97210 | Canola | extracellular | 98.68 | 98.68 |
| CDY53971 | Canola | extracellular | 98.68 | 98.68 |
| AT5G12880.1 | Thale cress | extracellular | 84.21 | 87.67 |
Protein Annotations
| EnsemblPlants:CDY69017 | EnsemblPlantsGene:GSBRNA2T00082024001 | ProteinID:CDY69017 | ProteinID:CDY69017.1 | SEG:seg | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI0004EB3734 | UniProt:A0A078JU47 | MapMan:35.2 | : | : |
Description
BnaCnng61420DBnaCnng61420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JU47]
Coordinates
chrLK038458:+:1432..1662
Molecular Weight (calculated)
8581.3 Da
IEP (calculated)
9.831
GRAVY (calculated)
-0.159
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MRCSWPTRFT FLMVLTVVIA MIAVAYGYSS VSSSNHKFPH YKYKAPLPPT TYSPYRYFSP PPPPPVTDSD SAAYAR
1: MRRSWPTRLI LLMVLTVVIT MIAAAYGYSS VSSSKHKFPH YKYKAPSPPT TYSPYRYFSP PPVTDSDSAA YVR
Arabidopsis Description
At5g12880 [Source:UniProtKB/TrEMBL;Acc:Q9LXV1]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.